Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01106 ATGGATAACTATGGATCATCTTCTCCATACCGGTATCCGAGCCCATATCCGTACCCTCCAAACCCTCATCAACCATACCCTCCTCCTCCAAGTTCAGCTCCTGATCCATATGCACAGGTTCCTTATCCTTCATATCCTTACCTTTCTTCACATTCCTTCAACTATTCTCACCATCTACCTCCAAGATCTTCCTCACATTCTGGGCATTTTGAGTATTCTTATCCCCCTCCTAACTCTATGGACTTTCCTCACCCTCCTCCACCATCTTATGCTCCTCCTCCCACTTATCCTTATCCCTACCATGTTCCTCCACCAGATCATGCTTCTCCCAGGCCTCCCATTTTTCACCATACCAGTTACCAACATGGATCACCTCAATACTATTATCCACCGAATGGTACCTATTCGCCTCCTGATATCCATTCCTGCGCCAATAGCTTCTCTAGTCCCTATTGGCCGGAGAACACAAGCACTGCTGCAGGAGGTAAAGTGTCACAAACTAGTGACAATTCCAAGCCTTCTCCGGCTTCTTCTTATCCACCTTTGGATGATCTTATGAGCAATGTTATGTTGTCTGATGGCCAGCCAACTGCTCCTGCATCACCTCCTGCGCCTGCAGGGCAACCGTTTATGCATTCCATTTCAGTTCCTAAGTTGCAACAGAAGAGAGAGGAGTTTTATGGATATTCTAATAACTCCTTCTCCGGGTGGGGATCCTCCTACCCCACTCGGGTGGATTCTTCTAGGCTTTCAGATTTTTCTGGCTCATTTAATGAATCAGTGCATAGTTTGCAGATTGTTCCAGCACAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTCCATGGAAATTTAGATATATGGGTCCGTGAAGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACTTTAGGGGATGTGTTTGGTAAATTGCCTGGTAGTGTGAGCAATAAAATTGAAGGAACTATGAATAAGAAGATTACTAGTGATCCTTATGTATCGATTTTAGTATCCAATGCAGTAATTGGGAGGACTTATGTCATTAGCAACTCTGAAAACCCTGTTTGGTTGCAACATTTCTATGTTCCTGTTGCACATCATGCCGCTGAAGTGCACTTTCTTGTTAAAGACAGTGATATTGTGGGCTCACAGCTCATTGGAATTGTCGCAATTCCAGTGGAGCAAATATACTCCGGTGAACTAGTTGAAGGAACCTTCCCAATCCTGAATAATAATGGGAAGCCATGTAAGCAAGGTGCTGTCCTGAGCATATCCATTCAGTACATACCTATGGAGAAACTGAGCATTTATCACAAAGGAGTTGGAGCTGGGCCTGAGTACATTGGGGTTCCTGGAACATATTTTCCTTTGAGAAAAGGTGGAACCGTTACTCTGTATCAAGACGCTCATGTTCCAGATGGGAGCCTCCCTAATGTGCTGCTTGATAGTGGGATGTACTATGTGAATGGAAAGTGTTGGCTAGATATCTTTGAAGCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGGTGGTCTGTGTGGCACAAAGTAAGGTTGGTTAGGGATGCTGCTGGTTATTCTTCAGATTATACCTTGGGTGATCTTCTAAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTGCTTATCTGGGACGATCCTACATCAAGAAACATTTTAGGTTATAAAACAGATGGTGTCATGGCTACTCATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGGAGTGGTAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGCACGATATACACTCATCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAGTAATAGAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTGTGTGACGGGCGGTATGATATTCCCCACCACCCTCTTTTTAGAACATTGAATACAACCCATAAGGATGACTACCACAATCCTACTTTCACGGGTAATGTTGGTGGTTGTCCGCGGGAGCCTTGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAAATAACTTTGAGGAGCGCTGGCTCAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGAAAATTTCATACGATGATGCTTTGCTAAGATTGGAAAGAATTCCAGATTTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCGGTTAAGAGGTTTCCAAAGGATCCAAAAGATGCAACAAGCAAGAACCTGGTATGCGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATATTAAGGCCATTCGCGCTGCACAGCATTACATTTATATAGAGAATCAATATTTTATCGGCTCTTCATACAATTGGAGTCAACATAAAGACCTTGGTGCTAATAACTTAATCCCAATGGAAATTGCTCTAAAGATTACTGAAAAGATAAAAGCAAATGAAAGATTTGCAGTGTATGTGGTTATTCCTATGTGGCCAGAAGGAGTTCCAACAGGGGCTGCCACGCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACCATTTACAAGGCTTTGGTTGAAGCAGGGCTTGAAGCAGCATTTTGTCCACAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGTCATTGGTTTGTATGATAATGGTAGTGTGACTGGACCTCCTCCCCCAGCAAATAGTCCTCAAGTGGCTAGCCGAAATAGCCGACGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGTTCCCTGGAAGGAACAAGGGACAGTGAGATTGCAATGGGCGCCTATCAACCTCATCATACATGGGCAAAATCACAATCTTATCCACACGGTCAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGAGGATTGCTTCTTGCAACCTGAGAGTCTTGAATGTGTAAGAAGGGTTAGAGTAATGGGAGAAATGAACTGGAAACAATTTTCAGCAAATGAAATAACAGAGATGAAAGGGCATCTACTGAAATACCCTGTAGAAGTTGATAGAAAGGGCAAGGTTAGACCACTTCCGGACCAGGAAGAGTTCCCAGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3291 0.4239 MDNYGSSSPYRYPSPYPYPPNPHQPYPPPPSSAPDPYAQVPYPSYPYLSSHSFNYSHHLPPRSSSHSGHFEYSYPPPNSMDFPHPPPPSYAPPPTYPYPYHVPPPDHASPRPPIFHHTSYQHGSPQYYYPPNGTYSPPDIHSCANSFSSPYWPENTSTAAGGKVSQTSDNSKPSPASSYPPLDDLMSNVMLSDGQPTAPASPPAPAGQPFMHSISVPKLQQKREEFYGYSNNSFSGWGSSYPTRVDSSRLSDFSGSFNESVHSLQIVPAQNKGSLRVLLLHGNLDIWVREAKNLPNMDMFHKTLGDVFGKLPGSVSNKIEGTMNKKITSDPYVSILVSNAVIGRTYVISNSENPVWLQHFYVPVAHHAAEVHFLVKDSDIVGSQLIGIVAIPVEQIYSGELVEGTFPILNNNGKPCKQGAVLSISIQYIPMEKLSIYHKGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVLLDSGMYYVNGKCWLDIFEAISQARRLIYITGWSVWHKVRLVRDAAGYSSDYTLGDLLRSKSQEGVRVLLLIWDDPTSRNILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKTVIVDADAGSNRRKIIAFVGGLDLCDGRYDIPHHPLFRTLNTTHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLNNFEERWLKASKPHGIKKLKISYDDALLRLERIPDFIGINDAPSVGEDDPEVWHVQIFRSIDSNSVKRFPKDPKDATSKNLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKITEKIKANERFAVYVVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFCPQDYLNFFCLGNREVIGLYDNGSVTGPPPPANSPQVASRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSLEGTRDSEIAMGAYQPHHTWAKSQSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRVMGEMNWKQFSANEITEMKGHLLKYPVEVDRKGKVRPLPDQEEFPDVGGKIVGSFLAMKENLTI* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01106 1096 CDD C2_plant_PLD 277 429 - -
Lapu1g01106 1096 Gene3D Endonuclease Chain A 752 997 - -
Lapu1g01106 1096 SMART pld_4 607 642 IPR001736 GO:0003824
Lapu1g01106 1096 SMART pld_4 942 969 IPR001736 GO:0003824
Lapu1g01106 1096 Pfam C2 domain 282 408 IPR000008 -
Lapu1g01106 1096 SUPERFAMILY Phospholipase D/nuclease 486 706 - -
Lapu1g01106 1096 ProSiteProfiles C2 domain profile. 260 406 IPR000008 -
Lapu1g01106 1096 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 607 642 IPR001736 GO:0003824
Lapu1g01106 1096 SMART C2_3c 283 405 IPR000008 -
Lapu1g01106 1096 SUPERFAMILY Phospholipase D/nuclease 774 1028 - -
Lapu1g01106 1096 MobiDBLite consensus disorder prediction 1 38 - -
Lapu1g01106 1096 MobiDBLite consensus disorder prediction 156 177 - -
Lapu1g01106 1096 MobiDBLite consensus disorder prediction 58 88 - -
Lapu1g01106 1096 MobiDBLite consensus disorder prediction 12 38 - -
Lapu1g01106 1096 FunFam Phospholipase D 755 988 - -
Lapu1g01106 1096 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 280 430 IPR035892 -
Lapu1g01106 1096 Pfam Phospholipase D Active site motif 943 969 IPR001736 GO:0003824
Lapu1g01106 1096 Pfam Phospholipase D Active site motif 608 642 IPR001736 GO:0003824
Lapu1g01106 1096 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 942 969 IPR001736 GO:0003824
Lapu1g01106 1096 Gene3D Endonuclease Chain A 486 721 - -
Lapu1g01106 1096 Pfam Phospholipase D C terminal 1016 1086 IPR024632 -
Lapu1g01106 1096 MobiDBLite consensus disorder prediction 58 72 - -
Lapu1g01106 1096 MobiDBLite consensus disorder prediction 156 211 - -
Lapu1g01106 1096 FunFam Phospholipase D delta 483 721 - -
Lapu1g01106 1096 Gene3D C2 domain 277 421 IPR035892 -
Lapu1g01106 1096 PRINTS Proline rich extensin signature 7 19 - -
Lapu1g01106 1096 PRINTS Proline rich extensin signature 76 97 - -
Lapu1g01106 1096 PRINTS Proline rich extensin signature 97 113 - -
Lapu1g01106 1096 PRINTS Proline rich extensin signature 27 43 - -
Lapu1g01106 1096 FunFam Phospholipase D delta 277 424 - -
Lapu1g01106 1096 PANTHER PHOSPHOLIPASE D 272 1087 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01106 Lapu-Chr1 24144818 24154700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01106 26 1096 Phospholipase D Gene Family (Wang group) AT2G42010 66.787 0.0 1437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01106 K01115 - gmx:100801286 1946.4