Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01081 ATGAATAGAAAATTTGGTGGTGGAAGGCAGCCGACAGGGACTCCTTCACTGGCTTGGTCCTCTGTGGTTGTTGTCTGTTCTCTTCTTGCTGGTGCTTCTGTTGTCCACAATATCTATAAGCCTAATCTTGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATACGTTGGTGATGAGGCACAGTCTAAGAGGGGTATTTTGACTCTGAAGTACCCTATTGAACATGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACATTCTATAACGAGCTTCGTGTTGCCCCTGAAGAGCATCCAGTTCTGTTGACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTTGCCATCCAGGCTGTTCTTTCACTGTATGCAAGCGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTACGAGGGTTATGCTCTCCCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAAATTTTGACTGAACGTGGTTATTCTTTCACCACCTCAGCAGAGCGGGAAATTGTAAGGGATGTTAAAGAGAAACTGGCCTACATTGCCCTTGACTACGAGCAAGAACTCGAGACAGCCAGGACCAGCTCAACTGTGGAGAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACCATTGGCGACGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCCATGATAGGAATGGAAGCTGCTGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTTGATATCAGGAAGGACCTTTATGGTAACATTGTCCTTTCAGGAGGAACAACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATTTCTGCATTGGCACCCAGCAGCATGAAGATCAAGGTTGTAGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCCATCTTGGCCTCTCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGACGAGTCTGGTCCATCAATTGTCCACAGAAAGTGCTTCTAA 1203 0.473 MNRKFGGGRQPTGTPSLAWSSVVVVCSLLAGASVVHNIYKPNLAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETARTSSTVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01081 400 PANTHER ACTIN 36 393 IPR004000 -
Lapu1g01081 400 SMART actin_3 30 400 IPR004000 -
Lapu1g01081 400 Pfam Domain of unknown function (DUF4516) 11 43 IPR027858 GO:0034551
Lapu1g01081 400 ProSitePatterns Actins and actin-related proteins signature. 129 141 IPR020902 -
Lapu1g01081 400 ProSitePatterns Actins signature 2. 381 389 IPR004001 -
Lapu1g01081 400 SUPERFAMILY Actin-like ATPase domain 172 400 IPR043129 -
Lapu1g01081 400 FunFam Actin, alpha skeletal muscle 59 96 - -
Lapu1g01081 400 Gene3D - 44 394 - -
Lapu1g01081 400 SUPERFAMILY Actin-like ATPase domain 44 178 IPR043129 -
Lapu1g01081 400 PRINTS Actin signature 140 153 IPR004000 -
Lapu1g01081 400 PRINTS Actin signature 261 277 IPR004000 -
Lapu1g01081 400 PRINTS Actin signature 86 108 IPR004000 -
Lapu1g01081 400 PRINTS Actin signature 165 184 IPR004000 -
Lapu1g01081 400 PRINTS Actin signature 51 60 IPR004000 -
Lapu1g01081 400 PRINTS Actin signature 74 85 IPR004000 -
Lapu1g01081 400 CDD NBD_sugar-kinase_HSP70_actin 99 206 - -
Lapu1g01081 400 FunFam Actin, alpha skeletal muscle 29 187 - -
Lapu1g01081 400 Gene3D - 163 363 - -
Lapu1g01081 400 FunFam Actin, muscle 205 296 - -
Lapu1g01081 400 FunFam Actin, alpha skeletal muscle 279 353 - -
Lapu1g01081 400 ProSitePatterns Actins signature 1. 78 88 IPR004001 -
Lapu1g01081 400 FunFam Actin, alpha skeletal muscle 354 400 - -
Lapu1g01081 400 Gene3D Actin; Chain A, domain 4 205 296 - -
Lapu1g01081 400 Pfam Actin 44 400 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01081 Lapu-Chr1 23992668 24000031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01081 44 400 Cytoskeleton Gene Families AT3G12110 97.759 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01081 K10355 - gmx:100792119 713.761