Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01065 ATGGCTTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTATAGGTACAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTTGTCAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCGTCTTACACGACCAAGTATTTTGGTTGTGAACTTGGTGCCCAGTCTAAGTTTGATGAGAAGACTGGGACATCTCACGTCAATGGAGCACATGATACTGCAAAGCTTGCTGGCCTTCTCGAGAACTTTATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCCTAATTACTAAGAACCAGATGATACAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACCACCTTCATCGTTAAGAACCCTCCAGAAGTAAAGAAAGGATCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAGGAGAGACTCAAGGAAGGTGAAGCGGCTGATGAGGAACAGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGTTCTTCATCTACGAAGGATGGCACTGCAAAATCTACCATTTCAAAGAAGAAAGGAAGTGGTTCTGATGAGGACCACGCATCGCCTACTCACAGACAAATTGAAGAGAAAGAGGAGGCTCATGACGAAGATGATCATGATGATGATGGTGTGCAATGGCTGACGGATACGTCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCCGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAATGAAAATGGTGGTTCTCAGAATGGTAACTCAATGAACTACGGGACTATGGTTTCTGAAGTGAAAGCTAATTTGAAGAAAGGTTTTGGAGCAAGTGAACTGCTTTCTCATCTTGCTGCACTTCCTGTACCTGCTCAAGAAAAGATGAATGCTCTGGTTGAGGCTCTATTCGAGGGAAAAGAGAAAGGTTTTGCTAAAGAAACTCTCAAGAAGAAGAATTACTTCGCTGCTGCTGTTGCAGAGGAGGGATCCCAGATTTTACTGCTTCAAGCTATTGAGGAATTCTCTTGCAAGTCTAATTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTGAAGGCACTGTACGATGCTGATGTGTTGGAGGAAGAGCACATAGTTCTGTGGTATCAAAAGGGACTGAAAGGCGATAACAAGAACTCCAAGATTTGGAAGAATGCTCAACCTTTCATTGACTGGCTTCAGAATGCAGAATCAGAATCAGAATCGGATGAATAA 1335 0.4307 MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEEQKKVKKEVKKKGSSSTKDGTAKSTISKKKGSGSDEDHASPTHRQIEEKEEAHDEDDHDDDGVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNENGGSQNGNSMNYGTMVSEVKANLKKGFGASELLSHLAALPVPAQEKMNALVEALFEGKEKGFAKETLKKKNYFAAAVAEEGSQILLLQAIEEFSCKSNSNALKEVALVLKALYDADVLEEEHIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESESDE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01065 444 ProSiteProfiles W2 domain profile. 284 443 IPR003307 GO:0005515
Lapu1g01065 444 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Lapu1g01065 444 Gene3D - 288 444 - -
Lapu1g01065 444 FunFam Eukaryotic translation initiation factor 5 290 434 - -
Lapu1g01065 444 SMART 542_3 352 439 IPR003307 GO:0005515
Lapu1g01065 444 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Lapu1g01065 444 Coils Coil 159 179 - -
Lapu1g01065 444 MobiDBLite consensus disorder prediction 148 226 - -
Lapu1g01065 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 365 443 IPR003307 GO:0005515
Lapu1g01065 444 MobiDBLite consensus disorder prediction 147 239 - -
Lapu1g01065 444 CDD W2_eIF5 298 441 - -
Lapu1g01065 444 Gene3D - 2 104 - -
Lapu1g01065 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0003743|GO:0006413
Lapu1g01065 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lapu1g01065 444 MobiDBLite consensus disorder prediction 271 292 - -
Lapu1g01065 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lapu1g01065 444 SUPERFAMILY ARM repeat 293 437 IPR016024 -
Lapu1g01065 444 Gene3D - 105 145 - -
Lapu1g01065 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Lapu1g01065 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01065 Lapu-Chr1 23884645 23888054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01065 1 436 Eukaryotic Initiation Factors Gene Family AT1G77840 62.980 3.43e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01065 K03262 - gmx:100777906 744.577