Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01062 ATGGATTCTCAAACCCTAGACTCCACCCATCTATTCCTCGCCGCCCTCAAAACCCTTCAACCCGAACCCCCTCCACCACCCTCCACCTCCCTGCCCCCACTCCCCTCCTCCGTCCCTCACTCCAAACTAATCCCCCACACCCGCTTCCTTGTCGACGCCTTCCGCCACGCCGGCCCCCACTCCCACTCCTACTTCCTCTCTCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACTACCGCCTCTCTCCTCCGCCGCATCCTCCGCGTCCCGGCCGCCCTCGTCGTCCCCCTCCCCCTCCGCCAACCGCTCCGCATTGACGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGTCCCGGCGCCGTCCAGTTCCTCTTCTCCCTCCCCTGCGCCGTTGGCACCCCCGCCCTAAGGTATGTCCACACCGGCGACTTCCGCTTTTCTAATTCCATGGTTTCGGAACCCGCCCTCGCCCCCTTCGTCGGTGCCGATGCGGTGTTTCTAGACACCACATATTGTAACCCTAAGTTCGTTTTCCCCTCGCAAGAGGAATCCATTGATTACGTTGCCAGTGTTGTGGAGAGGATTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGCAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGACCTAATTTTGTTAAGATGAAGGAGGTTATGGCCGAGAGAGGGGGGTCCTACTCCAAGGTTGTGGGCTTTGTTCCAACCGGGTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCAGTCAAGTCCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGAAGAGCTCAGAGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATTAGGAAGCATTTTGCTGGGTTGGTCGATGAGACTGCTAACAAGCACCAGTTTTTAAGGGGTTTTAGCCGTGCTCCCGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGCTCTGGAACCAGGTCAAGGCATGGACAAAGAAGTCATTCCATTTGAGGAGATAGAAGATGATAAAAGTATTGATCCTGATGTGGCTGTGGGTTTGCCTTCTTTTATGGGAGATACTTGTACACAAGATCCTACTTTGCTTAGTGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTTGTTTGCCCACATGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACGTCCAAGTGCTGCACATTAAATGACACTGATTCGCTTGCAAAACCCAACCTTAATAATACAAACAACACTTCCAAAAATATTGACATTTTTCCGAGTCAGGACTCTAAATTAACTATCCTGAGGCATAAAGTACCTAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTAGTGACACTAAGCTAAACAAAAAGGGCAAAGTCAAAGCAAAATCTGAACCAAGTGGTTCAAAGCAGTCCACACTTACAAGATTCTTCAGTAAAGTAATACCCGAGATGCCTGGTGGTACTCAATCTAATAATTCTGAACCAAAGCTTGACAAAAGCTCTGAAGTTGAAGGCTTGTTGCCAACTGATGTTGGACAAGTATACAAGGATGAAATTGATCAATTTTTGCAGATAATAAACGGGAACGAGTCCTTAAAGAAGCATGCCATCACGATAATTAACAAGACAAAAGGAGATGTCAATAAGGCATTGGATATGTATTACTGTAATTCCGGAAATCTTAGTGAAAATGAATTATCAGTTCAAGGGGAGAGCAAAATTGATAGACCTTTAGTAAAGAAGCATGCATCAGAGGAATTGAAAATTATACCTGAGATTTCTGGGAAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTCTCTCTACCACCTGAGAAATACAACCCTAAAGAACATGCGTGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCGTTGTTGTGCAATATGTTCAGAAGTTTGTTGGCTTTATCTCCAGCAGATGTGCTTCCTGCTGTATATCTATGCACAAACAAAATTGCTCCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGTTTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTGCTTGCACCACCTACTCCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGTACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCATTCCTGCCGTGGGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCAATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGATCTCATAGTTCCATCTCTCATGAACAAAGGAACTGATTTTTCTGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCCATGCTAGCAAAGATCACCAATGGCATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAATATGATGGTCAGCGGGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCATAATGGATGCGGAAGTTGTTGGTATTGACAGAAAAAATGGATGTCGGATTATGTCTTTCCAGGAGCTATCATCACGTGGTAGAGGTGGCAAAGATGCATTAGTTACTGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTCTTTGATATCATGTTCGCAAATGGAGAACAGTTATTGGGTTTTCCTCTACGCCTTCGACGAAAGTATCTGAAGGATTTGTTCTACGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAGCCTGTGAAGCTACGTTAACTAAGATAAATGCTTTCCTGGAATATGCAATCCACTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCGTCAAAGCGTTCTGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGCTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTAGTGGCGTGTTTCAATCCTGAAACAGAGGAGTACCAAAGCGTATGTCGGGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGATGAAAGAATTCTTCTCCGGGGACAACATCTTGTCCAAAAAGCCGCCATATTATCAAACAGGAGAGGCACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCGTCTCGAGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGTACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAAGAGTGA 4152 0.442 MDSQTLDSTHLFLAALKTLQPEPPPPPSTSLPPLPSSVPHSKLIPHTRFLVDAFRHAGPHSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRRILRVPAALVVPLPLRQPLRIDGAQVTLLDANHCPGAVQFLFSLPCAVGTPALRYVHTGDFRFSNSMVSEPALAPFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERIERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSKVVGFVPTGWTYEVKRSRFAVKSKDSFQIHLVPYSEHSNYEELREYVKFLKPKRVVPTVGLDVEKSDSKHADKIRKHFAGLVDETANKHQFLRGFSRAPGEVGFKAEKGVSDALEPGQGMDKEVIPFEEIEDDKSIDPDVAVGLPSFMGDTCTQDPTLLSDEEKEKIIRELSCCLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSLAKPNLNNTNNTSKNIDIFPSQDSKLTILRHKVPSPISPAKRKRSSDTKLNKKGKVKAKSEPSGSKQSTLTRFFSKVIPEMPGGTQSNNSEPKLDKSSEVEGLLPTDVGQVYKDEIDQFLQIINGNESLKKHAITIINKTKGDVNKALDMYYCNSGNLSENELSVQGESKIDRPLVKKHASEELKIIPEISGKKVLKDNVDATQLSLPPEKYNPKEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAPDHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMHSCRGKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQDLIVPSLMNKGTDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFIMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLACEATLTKINAFLEYAIHSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIAAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDNILSKKPPYYQTGEAPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVTAKE* 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01062 1383 NCBIfam ATP-dependent DNA ligase 828 1370 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lapu1g01062 1383 MobiDBLite consensus disorder prediction 572 613 - -
Lapu1g01062 1383 Pfam DNA ligase N terminus 770 946 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu1g01062 1383 MobiDBLite consensus disorder prediction 19 34 - -
Lapu1g01062 1383 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1024 1032 IPR016059 GO:0003909
Lapu1g01062 1383 Gene3D - 747 1002 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu1g01062 1383 Gene3D - 44 369 IPR036866 -
Lapu1g01062 1383 CDD OBF_DNA_ligase_I 1229 1372 - -
Lapu1g01062 1383 Gene3D - 191 347 - -
Lapu1g01062 1383 SUPERFAMILY Nucleic acid-binding proteins 1229 1373 IPR012340 -
Lapu1g01062 1383 MobiDBLite consensus disorder prediction 622 641 - -
Lapu1g01062 1383 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 370 IPR036866 -
Lapu1g01062 1383 Gene3D - 1011 1224 - -
Lapu1g01062 1383 FunFam DNA ligase 1029 1160 - -
Lapu1g01062 1383 ProSiteProfiles ATP-dependent DNA ligase family profile. 1111 1258 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu1g01062 1383 CDD Adenylation_DNA_ligase_I_Euk 991 1223 - -
Lapu1g01062 1383 Pfam ATP dependent DNA ligase C terminal region 1246 1351 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lapu1g01062 1383 FunFam DNA ligase 1225 1382 - -
Lapu1g01062 1383 MobiDBLite consensus disorder prediction 18 37 - -
Lapu1g01062 1383 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Lapu1g01062 1383 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 750 955 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu1g01062 1383 FunFam DNA ligase 191 347 - -
Lapu1g01062 1383 CDD SNM1A-1C-like_MBL-fold 38 188 - -
Lapu1g01062 1383 Pfam ATP dependent DNA ligase domain 1000 1220 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu1g01062 1383 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1375 - -
Lapu1g01062 1383 Gene3D DNA ligase/mRNA capping enzyme 1029 1160 - -
Lapu1g01062 1383 Gene3D - 1225 1382 IPR012340 -
Lapu1g01062 1383 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 994 1226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01062 Lapu-Chr1 23847495 23861794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01062 752 1373 Core DNA Replication Machinery Family AT1G08130 38.994 3.00e-160 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01062 - - gmx:100807673 2399.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01062 1 23847495 23861794 Lapu1g01062 1 23847495 23861794 ECH