Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01059 ATGGATTTCCATAGTAATTCAATTTCATCAAATCTGGTGTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCGAGAAAAAGATAGAGAGCGGAGAAACACTTTCAATCTACCATTGGATTTCAATAGTAATTCAGCTTCAACAAATGTGTTATCCAATTCCATGTCAATACCCTCATATCCAATGCCTCAATATTGTCCAGAAACCATACAGGAGGAGAAACTCCGATCCTTCTGGGAAAAGCAGTTGTTGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATCATGAAAACTGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAGCTCACTTTTCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAGAGTACTGTGCAGCCATGTGACGTTGCAAAGGTCATTATGCAAAATGATGCCATGCATTTCCTCACTGATATTGTTCCAGATAACCTCCAAAATTTCTGTGCTTACGGTGCTGAGCAGGAAGAGAATGCTGCAGGAAACATTGCAGAAGGAACGCATTCAAGCCAAGCTGCCCTGCCTGACACAGCTGGTTTTATGAGAAATCCTATGAATATGATGAATATGGGCAGTGACTGGGGGGCAGGAAACCAACTGATTCATCAACCCAACAACATTATGCAGCCTCCCTTTGGTATGCCTTCAGATCAATTGCCTTACAATTTTCATCCCAAGAGAACTTAG 795 0.4277 MDFHSNSISSNLVSNSMLVPSCPILHYHREKDRERRNTFNLPLDFNSNSASTNVLSNSMSIPSYPMPQYCPETIQEEKLRSFWEKQLLDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTFRAWMRAEESNKSTVQPCDVAKVIMQNDAMHFLTDIVPDNLQNFCAYGAEQEENAAGNIAEGTHSSQAALPDTAGFMRNPMNMMNMGSDWGAGNQLIHQPNNIMQPPFGMPSDQLPYNFHPKRT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01059 264 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 163 IPR003958 -
Lapu1g01059 264 FunFam Nuclear transcription factor Y subunit C 68 179 - -
Lapu1g01059 264 SUPERFAMILY Histone-fold 77 173 IPR009072 GO:0046982
Lapu1g01059 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 73 194 - -
Lapu1g01059 264 Gene3D Histone, subunit A 68 179 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01059 Lapu-Chr1 23813835 23816617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01059 43 247 CCAAT-HAP5 Transcription Factor Family AT1G54830 34.450 7.54e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu1g01059 CBFD_NFYB_HMF 5.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01059 - K08066 gsj:114370134 181.03