Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01053 ATGCAACTTCTTCAAGGCACCTTTTTCTCATTTTTGGCCATAACCATCACCCTAAATCAAATTCCAACATCTTGCTCTGAAGATGTGCATTATCTGAAATGCAGCTCTCCATTTCATTGTGGAAATCTTAAAAACCTGAGTTATCCTTTCTGGGGATATAGTAGACCCCCATATTGTGGCCACCCTGCGTTTAACCTTCAATGCACAGGTGAAGTAGCAACGCTTACCTTCATGTCGGAGAGCTATAGAGTTCTTGAAGTCAATGATTCGGATCATAGACTCAAACTTGTAAGAACTGACTACTGGAACAACATCTGTCCTACTAGCCTCAGGAACATCAGTATAGGTTGCACTTTCTTTGATTATGGTTCAGATTCTCAGAACCTGACTCTCTACTATGATTGTCCTTCATTTCCTCAATCAGATAGCTTTTCCCCTTGGTTTAATTGTAGTGTAAATGGAACTCAAATGATTAACTATTTTTTGACGGAGAGCATGCTTGAAAATTCTGAGTCTGGTGAAATACTGGGAGCATGCAAATCTAGAGTAGTTGTTCCGATTTTGGAGTCAGAAGCTAAAGTTCTAGAAACAAACTCAACAGTGGAAAATCTTAAGGCCGTTCTTGACAATGGTTTTGGCGCGGAGTGGGATGCAAACAATAGCTTGTGTGATGAATGCCAACACTCTGGTGGGCATTGTGGTTATAACCCAAGCTCAAGTGAATTTGCTTGCTATTGCAGGGATGGATCTTTTCCATCCACATGTAAAAAATCAGGTAAAAGCCGCAATGTAGGTGTAGTAATAGGCGCTACTGTAGGAGGAGTTGCAGTCCTTGTTGTCATTCTTGGATGTGTGTACTTTATGGTTCAAAGACGAGGAAAAATTTATCATAAATCAAGAAGCATGGAGCTCTTCATAGCCCCAACTTCAAGCGGAGACACTTTTGCATCCACAACTAATACGTCTCAAACTCTATCTTCTTACCAATCTTCCAAGTCTGACCCAGTGACCAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGAGGAACTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTGAAGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGGCGTATAGTTGCAGTGAAGCGCCATTATGAAAGCAACGCTAGGCGTATTATGCAGTTCATGAATGAAGTTCAGATTCTAGCCCGCTTAAGGCACAAGAACCTCGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTTTATGAATTCATACCTAATGGAACAGTGGCTTATCATCTTCAAGGAAGAAGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTGTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCAAATGATGTCATTCACCGCGATGTTAAAACCAACAACCTTCTCTTGGATGATCAATTTCGCGTCAAGGTTGCTGATTTTGGTCTCTCAAGGGATTTCCCAAACCATGTCACTCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATTATCAGTGCTACCAACTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTCATATCATCATTGCCAGCTGTGGACATCAACAGGAATCGCAGTGATGTGAACTTGTCGAACATGGCTGTCAATAAAATCCAAAACCAGGAACTGCACGACTTGGTTGATCCTTATCTTGGGTTTGAGAAGGATCATGCTATAAGGAGGATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAACAGGAAAGAGATATGAGACCATGCATGAATGAGGTGGTGGAAATCTTAAGAGGAATCAAGAGTGATGATTTTGGTGCACGGGAAGAGGCAGAAGTATTGGATATTAGGACTGATGAAGTTATACTTTTGAAGAAGGATCATCCCCCAGTTTCACCAAATTCAGTTGTTGACAATTGGGTTAGCGGCTCCTCTGTATCAAATTCCTCATAG 2055 0.419 MQLLQGTFFSFLAITITLNQIPTSCSEDVHYLKCSSPFHCGNLKNLSYPFWGYSRPPYCGHPAFNLQCTGEVATLTFMSESYRVLEVNDSDHRLKLVRTDYWNNICPTSLRNISIGCTFFDYGSDSQNLTLYYDCPSFPQSDSFSPWFNCSVNGTQMINYFLTESMLENSESGEILGACKSRVVVPILESEAKVLETNSTVENLKAVLDNGFGAEWDANNSLCDECQHSGGHCGYNPSSSEFACYCRDGSFPSTCKKSGKSRNVGVVIGATVGGVAVLVVILGCVYFMVQRRGKIYHKSRSMELFIAPTSSGDTFASTTNTSQTLSSYQSSKSDPVTRSYYFGVQVFTYEELEEATKNFDASRELGEGGFGTVYKGELKDGRIVAVKRHYESNARRIMQFMNEVQILARLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVAYHLQGRSSKSTLLPWPIRLNIAVETAEALAYLHANDVIHRDVKTNNLLLDDQFRVKVADFGLSRDFPNHVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLPAVDINRNRSDVNLSNMAVNKIQNQELHDLVDPYLGFEKDHAIRRMTTAVAELAFRCLQQERDMRPCMNEVVEILRGIKSDDFGAREEAEVLDIRTDEVILLKKDHPPVSPNSVVDNWVSGSSVSNSS* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01053 684 ProSiteProfiles Protein kinase domain profile. 359 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01053 684 Gene3D Transferase(Phosphotransferase) domain 1 436 645 - -
Lapu1g01053 684 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Lapu1g01053 684 SMART serkin_6 359 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01053 684 FunFam Wall-associated receptor kinase-like 20 436 644 - -
Lapu1g01053 684 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Lapu1g01053 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Lapu1g01053 684 SUPERFAMILY Protein kinase-like (PK-like) 334 635 IPR011009 -
Lapu1g01053 684 Pfam Wall-associated receptor kinase C-terminal 155 249 IPR032872 -
Lapu1g01053 684 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 679 IPR044652 GO:0004672
Lapu1g01053 684 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 335 435 - -
Lapu1g01053 684 Gene3D Phosphorylase Kinase; domain 1 330 435 - -
Lapu1g01053 684 Pfam Protein kinase domain 361 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01053 Lapu-Chr1 23738893 23745788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01053 38 684 Receptor kinase-like Gene Family AT1G25390 41.337 4.34e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu1g01053 Pkinase 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01053 - - gmx:100811407 1097.03