Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01047 ATGGCGGAAGTTGAATACCATGCAAAATCCGCTACTAACACCCCACCCCTAAAGCTCTTTGGCATCAACATTAACAAGTCCCCACAAGATCAAACTGATCGTGAAGCAGGTTCCGATTCTGAGCCTTTCAATCCAAGAAAATACGAGTGTCAGTACTGCTTCAGAGCATTCGCAAACTCACAGGCACTAGGAGGCCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAGCGTGCTCAAATGCAGGCTGCTCGTGGCTTTGTCGCTTCACACGTTCACAACACAATCATATCAACCTTCTCACCACAATCTCAGCCACCTCTATCGTGGCTATGCACACCACATGCATGGTCAAGTGGTGGTGCATATGACTCAGGAGTCGCTTTTGTGACTCCTGGAAGACGAGTCTATGCTACAGCTGGTGCCTCCATCACTGATGGCCGTGGCCACCGCAATCCTCCGCCGGAGTTCGGTGACTTCAGGAGCAGCAGTTTCAGTGACAGAGGGAACGGTGGTGGTAATGGTCATGAACGAGGGTTCGGTTTGGATTTGCATCTTAGCCTATGA 570 0.5035 MAEVEYHAKSATNTPPLKLFGININKSPQDQTDREAGSDSEPFNPRKYECQYCFRAFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHVHNTIISTFSPQSQPPLSWLCTPHAWSSGGAYDSGVAFVTPGRRVYATAGASITDGRGHRNPPPEFGDFRSSSFSDRGNGGGNGHERGFGLDLHLSL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01047 189 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Lapu1g01047 189 MobiDBLite consensus disorder prediction 17 31 - -
Lapu1g01047 189 MobiDBLite consensus disorder prediction 17 43 - -
Lapu1g01047 189 PANTHER ZINC FINGER PROTEIN 5 9 189 IPR044299 GO:0010090
Lapu1g01047 189 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Lapu1g01047 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Lapu1g01047 189 MobiDBLite consensus disorder prediction 143 179 - -
Lapu1g01047 189 Gene3D Classic Zinc Finger 31 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01047 Lapu-Chr1 23695413 23696339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01047 11 189 C2H2 Transcription Factor Family AT1G67030 43.902 3.39e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g01047 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01047 - - gmx:100527555 271.937