Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00993 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGGTCGTAGAAGCTCGGAACCACCTTCTTCGGGGGGCAGATACGTGAAGACTCGCGCTGCAGTTGCCAGGGAAGCGGCGGCGGCGGCGGAGAGGCCGAGGACTCGTTTGGCGGCGAAACAATTAGAAGAGGAGAAGCCGGTCATTGTTATATCCGATCACACAAAGAAGGAAGTTGAAGGCGGCGCGATGGGGGACGAGAGTGGTGGCCTGAGTGCAAACAAGGGTGTTGCTCAAGAAGATGACGCTAATCCAGCTCCTTTCCCGGATAGGGTTCAAGTAGGAGGGTCTCCTGTCTACAAAGTGGAGAGGAAACTTGGCAAAGGAGGATTTGGACAGGTTTTTGTTGGTCGGCGAGTAACCGGTGGTAACGACCGTACTGCTGGTCCTGGTGCTACTGAGGTGGCTTTAAAATTTGAGCACAGGAACAGCAAAGGCTGTAACTATGGCCCCCCTTACGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATTCCTAAAGTACACTATAAGGGGAGGCAAGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCCAGCTTGTGGGACGTTTGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTTTCCTGCATTGCAGTGGAGTCCTTGTCAATATTGGAGAAAATGCACTCTAGAGGCTATGTGCATGGTGATGTAAAACCGGAGAACTTTTTACTAGGTCAGCCGTCTACGCCACAAGAAAAAAAACTGTATCTTGTAGACCTTGGATTAGCTACAAAGTGGAGAGACACCTCCAATGGGCTTCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGTTATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGCAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATTTTCCTTCATAAAGGAAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCGCCTGAGATGCTATGCTGTTTCTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTCAACATGAAATTCGATGAAGAACCTAACTATTCTAAGTTAATTTCTTTGTTTGATGGTATGCTTGGACCAAATCCCGCATTGAGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAAGATGATTCACAGCCCAAAAAGAAGGTCCGTTTGGGTGTTCCTGCTACACAATGGATTTCAGTTTACAATGCCAGACAGCCAATGAAGCAAAGGTATCATTATAATGTAGCAGATACAAGATTAGCGCAGCATGTGGAGAGAGGAATTGCAGATGGCCTCCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCCGGAACTGGTTTTTCCAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACATAAGGAATGGATCATGGAGCAGTGGGAAAAAAACTATTACATTACTTCTATTGCAGGAGCTAATAATGGGAGCTCTCTTGTTGTGATGTCAAAAGGCACACACTATACACAGCAATCATACAAAGTTAGTGATTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATTCTGGATACACTGACCAGGTTATTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGAAGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTGATACTGAGCATTCCTAGACGCAGGCCAGGTGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA 2031 0.4569 MPELRSGPRRRRAPVGRRSSEPPSSGGRYVKTRAAVAREAAAAAERPRTRLAAKQLEEEKPVIVISDHTKKEVEGGAMGDESGGLSANKGVAQEDDANPAPFPDRVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPSTPQEKKLYLVDLGLATKWRDTSNGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARQPMKQRYHYNVADTRLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTHYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNSGYTDQVIELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00993 676 CDD STKc_CK1 114 389 - -
Lapu1g00993 676 ProSitePatterns Protein kinases ATP-binding region signature. 120 152 IPR017441 GO:0005524
Lapu1g00993 676 FunFam casein kinase 1-like protein HD16 87 432 - -
Lapu1g00993 676 MobiDBLite consensus disorder prediction 63 109 - -
Lapu1g00993 676 MobiDBLite consensus disorder prediction 1 33 - -
Lapu1g00993 676 Gene3D Transferase(Phosphotransferase) domain 1 87 435 - -
Lapu1g00993 676 PANTHER CASEIN KINASE-RELATED 114 638 - -
Lapu1g00993 676 MobiDBLite consensus disorder prediction 1 17 - -
Lapu1g00993 676 Pfam Protein kinase domain 114 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00993 676 SUPERFAMILY Protein kinase-like (PK-like) 114 397 IPR011009 -
Lapu1g00993 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lapu1g00993 676 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00993 676 SMART serkin_6 114 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00993 676 MobiDBLite consensus disorder prediction 63 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00993 Lapu-Chr1 23169920 23178961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00993 114 271 EF-hand Containing Proteins AT4G36070 28.313 5.18e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lapu1g00993 Pkinase 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00993 - - gmx:100819969 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00993 1 23169920 23178961 Lapu1g00993 1 23169920 23178961 ECH