Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00990 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAGGGTTTCAAAGGAATCAGAAGAGTGGCAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAGCCTCTTTATTCATTGGAAGGTAGATTTTCTGTATCAAGCGAAAGAATTCGACCGCAGAGAATAAAGTCTGATGCCTCACGATATCAGATTACAAGTGGGCAGTTGAAAACGGACACTCATACTGCAAAGAACCGGGGATCAAGGGATAATGTTTTTTTGAGAGACGAAGCGGATGAATGGTTGACGAATGAAGCCAAGAAGAACTCTTCTAGCGATACTGATTCAGGTAAAGGAGTTCATACCAATTCGTCAGAATACATGCCAAGGGATGAGATTGATGAGGTGATTGAGCAAGAAGCTAGCAGAGATGAAGATACTTATTCAAAACAAGTGTATGCAAAAGGACGCAAAGAAAAAAATTTCCATGAACTTGCGGAAGACAAAAAGTGGGGGAAAAAGCCTGTCAAGGATGCAGAGGTGCAAAGCAGAAGTTCCAGTATACATATGCGTGGACACTCGAGCGAAACTGGAAAGAATAAGGAGTCGTACACAAGATCAAACAGCAAGAGCTTTCAATATCGCAGCAGGAACAAAAATATTAATCTTGCTGTGGAAGTAGCTTCTAGTCTTGCTCTTGATGAAGTAGCAGTCCAAGCCGTAGTTTCCATTCTAAATGGATATATAAAGCGTTTTCCAAAAGATGAGGATTTTCGGTCTACATTGCATCACAAATGTTTCTCCTCCTTGAATTTTCTTGAACTGAAACAAGAGAAAATTTCTCAGAGCAAAGTCGTAAGAAGTCTCGAGCAAGCAATTGAGGCCATTGAGCAATCCGTTGACGAACCTGTATCTGCCATGTATCTGAAAAGAACAACGATGCAGCTTAGTATTATTACAGGTTTGAGTTTAAATGATTTGAAATACGAGTTTACGTGTGGGATCCCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACTTGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACTATATTGTTACCTGAACTGTGGGAGCATCTATTTTCTCCACAATTTTCTCACTTGAAGGCATGGTACATGAAGGAAGAAGAAGTTCTAGTAGACACACCAAACAAAACAAGAAGGCTAAAACTTCTTCAAAAAGTGTATAATGAGCATTTGGATTCTGGAACTCATGTATTTGCTGTATACTACAAAGATTGGCTTACTGAAGGAGTGAAATCTCCAGCAATTCCTTCAATTGGCATTCCATCAGTTTCTGTCACGGGAAGTCAAGAGGGAAGTTCACTTGGTCATTCTTTCGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGTAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGTAGACCTGGTGTTTACCAAGTCAAAGATGTTAAGGATGCTGGTAACGAAGACAACTGCGGGAAAGGCTCTTATGGCTCAACATTTGTAAAACAGACATTAACGTATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATAAAACCAAGCCTCACAAAGGAAATTCTATGACAGCTGCAGAAGAATGGCAAAAACGGAATCTCAGTGATGACATTAATAATTCTTTCTCTATGCAAACTAATTTAAACAATCACATTATTGATGCCCTGCTACATGAAAAAGCAAATGAACTTGATCTCAAAAAGCTAAATAAGACAAGTTATGCTCTTCAAGGATCACATTTTCCAGGCACTCCACAGGAATTTATTTGTTCTCTTACTGGAAAAATCTTTGAGGATCCAGTCACCCTAGAGACAGGCCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACGTGCCCGGTAACTGGAAATGCTCTGGAATGCATGGGAATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGAACGTTTTGATTACCTTCTTGATCTTGCTTCCCAAAGAGTGGAGACTTCAGAGGAGCTTAAGTTTAAAAAAGGGGATGAGGCTGCTGTTTTCAAGTTAGACAGCCTTTTCTTCTTTTTGAAAGAAGAGGAGAAATCGGCTTATGTTAAGCATCTCATCTCTTCAGGAGTTCTTCCATTTCTTTTTAGGAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACAAGTGTTGTCACTCTTGCTTAATTGTATGCAAGTAGACTCTGGTTGTATATATACGATAGCAAGGAGTCTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAAGCTACCCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACATCATTCATAAGTGGCTTGGCGGGTGAAAAAGTATTTAATATAATGCATATTCTGCTCATGTATCTCAAGAATTCTTCTCCATTTGAAAAGCCCCTAATTGCTGTCCTTTTGTTACACTTTGATCTGCTGGCTGAGCCTCAAAAGTTTAGCGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATGGCAGCTTAAACGATGAGAAGGCCCGAGAAAAGTGTTGCAGAGCACTTTTAATCTTGTGTGGGCATTTTTCTTCCACTGGAAAGATACCAACCAAGACTAGAATCTTAAAACAAGCAGGTTATAATCATGGTAGCGTAGAAGTGAAAGCTCCTGGAAGATGA 2841 0.3992 MASSLEELLAEEGFKGIRRVARSRSSFHYGASSEPLYSLEGRFSVSSERIRPQRIKSDASRYQITSGQLKTDTHTAKNRGSRDNVFLRDEADEWLTNEAKKNSSSDTDSGKGVHTNSSEYMPRDEIDEVIEQEASRDEDTYSKQVYAKGRKEKNFHELAEDKKWGKKPVKDAEVQSRSSSIHMRGHSSETGKNKESYTRSNSKSFQYRSRNKNINLAVEVASSLALDEVAVQAVVSILNGYIKRFPKDEDFRSTLHHKCFSSLNFLELKQEKISQSKVVRSLEQAIEAIEQSVDEPVSAMYLKRTTMQLSIITGLSLNDLKYEFTCGIPNYKLSACAHLYLSVVYLMQKKNKVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQFSHLKAWYMKEEEVLVDTPNKTRRLKLLQKVYNEHLDSGTHVFAVYYKDWLTEGVKSPAIPSIGIPSVSVTGSQEGSSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSFSRPGVYQVKDVKDAGNEDNCGKGSYGSTFVKQTLTYESETVKFTDQDIEGFSQGVAIDKTKPHKGNSMTAAEEWQKRNLSDDINNSFSMQTNLNNHIIDALLHEKANELDLKKLNKTSYALQGSHFPGTPQEFICSLTGKIFEDPVTLETGQTFEREAIKAWFEKGNRTCPVTGNALECMGMPFTNLILKRLIDNWRSERFDYLLDLASQRVETSEELKFKKGDEAAVFKLDSLFFFLKEEEKSAYVKHLISSGVLPFLFRRFEQGNVEEKSQVLSLLLNCMQVDSGCIYTIARSLNRKCLLELLHSKEATPTTNAILFLTELLSMKRRKDVTSFISGLAGEKVFNIMHILLMYLKNSSPFEKPLIAVLLLHFDLLAEPQKFSAYREVAVNAIAEALDGSLNDEKAREKCCRALLILCGHFSSTGKIPTKTRILKQAGYNHGSVEVKAPGR* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00990 946 PANTHER OS04G0584500 PROTEIN 1 614 - -
Lapu1g00990 946 SMART Ubox_2 627 691 IPR003613 GO:0004842|GO:0016567
Lapu1g00990 946 MobiDBLite consensus disorder prediction 75 107 - -
Lapu1g00990 946 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 698 IPR013083 -
Lapu1g00990 946 ProSiteProfiles U-box domain profile. 623 698 IPR003613 GO:0004842|GO:0016567
Lapu1g00990 946 MobiDBLite consensus disorder prediction 52 124 - -
Lapu1g00990 946 Pfam U-box domain 625 694 IPR003613 GO:0004842|GO:0016567
Lapu1g00990 946 MobiDBLite consensus disorder prediction 162 204 - -
Lapu1g00990 946 MobiDBLite consensus disorder prediction 58 74 - -
Lapu1g00990 946 SUPERFAMILY RING/U-box 621 694 - -
Lapu1g00990 946 CDD RING-Ubox_PUB 625 673 IPR045210 -
Lapu1g00990 946 SUPERFAMILY ARM repeat 743 916 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00990 Lapu-Chr1 23128270 23134391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00990 625 691 U-box Gene Family AT5G42340 44.776 6.67e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00990 - - gmx:100820501 1476.46