Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00987 ATGTCACGCTCACATGATTCCTCTGCTTTCCACACCCCCAGATTGGTCCTCAAGACGGTTTTGGCCAAATCTCAACACGAAGGGGACGGAGCTGTTGTTAGAAGAGGCATTGGAAGGAGCGACTTGAAGAACTTGGATCCCTTCCTCATGTTGGATCACTTCTCAGTATCCCCCCCCGCAGGATTTCCCGATCATCCACACAGAGGTTTTGAAACTGTCACCTACATGTTAGAGGGAGGTATCACTCACCAAGATTTTGCTGGGCACAAGGGTACAATAAGAGCTGGTGATGTTCAGTGGATGACTGCAGGCAGGGGAATTATTCACTCTGAAATGCCCGCAGAAGCAAACAACAAGGGATTGCAATTATGGATCAATTTATCCTCAAAGGACAAAATGATCGAGCCCAACTACCAAGAACTTCCAAGTGAGAACATTCCAACGGCAGAAAAAGATGGGGTTGAAGTGAGAGTGGTAGCAGGAGAAGCAATGGGAGTGCGATCCCCTGTGTACACACGAACTCCAACCATGTTCCTAGTTTTCTCAATGATGCCCGGAAGTGAGTGGCATCAGAGCATTCCAGACTCGTGGAATTGCTTTGTTTATTTGATTGAAGGAGAAGGGGTTTTCGGGTGTCCAAGTTCATCCCCAACTGTGGCACATCATGTCCTTGTTCTGAGTCTAGGTGACGGGCTTAGCGTATGGAACAACTCTTCAAAGCCTCTGAGGTTTGTGGTGATAGGAGGAGAGCCACTAAACGAGCCAGTGGCTCAGTATGGTCCTTTTGTGATGAACACACAGTCTGAGATTGAGAAAACCCTTGAAGACTATCAATTTGGGAGGAATGGATTTGAGATGAGGAAGTATTGGAAGTCTCAATAG 882 0.4717 MSRSHDSSAFHTPRLVLKTVLAKSQHEGDGAVVRRGIGRSDLKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNKGLQLWINLSSKDKMIEPNYQELPSENIPTAEKDGVEVRVVAGEAMGVRSPVYTRTPTMFLVFSMMPGSEWHQSIPDSWNCFVYLIEGEGVFGCPSSSPTVAHHVLVLSLGDGLSVWNNSSKPLRFVVIGGEPLNEPVAQYGPFVMNTQSEIEKTLEDYQFGRNGFEMRKYWKSQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00987 293 PANTHER PIRIN-RELATED 1 292 IPR012093 -
Lapu1g00987 293 FunFam pirin 27 161 - -
Lapu1g00987 293 Pfam Pirin 34 125 IPR003829 -
Lapu1g00987 293 SUPERFAMILY RmlC-like cupins 14 291 IPR011051 -
Lapu1g00987 293 CDD cupin_pirin_N 31 127 - -
Lapu1g00987 293 PIRSF Pirin 12 291 IPR012093 -
Lapu1g00987 293 CDD cupin_pirin_C 175 251 - -
Lapu1g00987 293 Gene3D Jelly Rolls 27 278 IPR014710 -
Lapu1g00987 293 Gene3D Jelly Rolls 147 252 IPR014710 -
Lapu1g00987 293 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00987 Lapu-Chr1 23111169 23113076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00987 12 288 Calmodulin-binding Proteins AT3G59220 64.516 8.96e-133 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00987 K06911 - gmx:100775597 540.421