Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00983 ATGGGTTGCTTCTCCTGTTTCGATTCCAGTTCCAGTTCCAGGGAGGATCACGGCCTCCGCCCTCACCACCACCCCCACCCACAACCCAATTCCAATCCCAATCCCAATCCCAATCCATCTCTCCCTTCTCAGATTTCCAAATTGCCCTCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAGAAGGGAATTGCCTCCTCCCAACACCAAGGAAGGCCATGGACCCGCCGTCCAAATTGCCGCTCAAACTTTTTCTTTCCGTGAACTTGCTGCTGCAACAAAAAACTTTAGGCCAGACTCCTTTGTTGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGCAAGCTTGAAACCACTGGTCAGATTGTTGCAGTCAAACAGTTAGACAAAAATGGTCTACAGGGTAATCGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTCATCGGATACTGTGCGGATGGGGAACAACGCCTCCTTGTTTATGAATTTATGCCTTTGGGATCATTGGAAGATCACCTTCATGATCTTCCCCCCGATAAGGAACCATTAGATTGGAACACTAGAATGAAAATAGCTGCCGGTGCTGCAAAAGGATTAGAATACCTGCATGACAAGGCAAATCCTCCTGTCATTTATAGAGACTTCAAGTCGTCTAACATATTACTTGACGAAGGATACCACCCTAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGAGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGCTTTGGGGTTGTCTTCTTAGAGCTTATTACTGGCCGGAAAGCAATTGACAGCACCCAGCCCCATGGAGAGCAGAATCTTGTCACATGGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTGGCTGATCCTAGGCTGCAGGGACGGTTTCCCATGCGGGGTCTTTACCAGGCTCTAGCTGTGGCATCAATGTGCATTCAAGAATCGGCAGCCACACGCCCTCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCCAACCAGGCATATGACCCCAACAATGCTGGGCATGGTTATAGGGGGTCTAGTGATGATAAAAGGAACAGGGATGATAAAGGTGGAAGAATACTGAAAAATGATGAAGCTGGGGGATCTGGACGTAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCAAGAATGTTAAACAGAGATCTAGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGGGAGAACTTGAGACAAAAAAGACAACAAAGTTTGCAGCAGGGCAGTTATGGTTCTAACTAA 1425 0.4779 MGCFSCFDSSSSSREDHGLRPHHHPHPQPNSNPNPNPNPSLPSQISKLPSGADKLRSRSNGGSRRELPPPNTKEGHGPAVQIAAQTFSFRELAAATKNFRPDSFVGEGGFGRVYKGKLETTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQAYDPNNAGHGYRGSSDDKRNRDDKGGRILKNDEAGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLRQKRQQSLQQGSYGSN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00983 474 MobiDBLite consensus disorder prediction 1 78 - -
Lapu1g00983 474 CDD STKc_IRAK 105 373 - -
Lapu1g00983 474 MobiDBLite consensus disorder prediction 391 443 - -
Lapu1g00983 474 FunFam Serine/threonine-protein kinase PBS1 72 175 - -
Lapu1g00983 474 FunFam Serine/threonine-protein kinase PBS1 176 390 - -
Lapu1g00983 474 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Lapu1g00983 474 Gene3D Transferase(Phosphotransferase) domain 1 176 390 - -
Lapu1g00983 474 PANTHER OS07G0668900 PROTEIN 33 385 - -
Lapu1g00983 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Lapu1g00983 474 SUPERFAMILY Protein kinase-like (PK-like) 85 371 IPR011009 -
Lapu1g00983 474 MobiDBLite consensus disorder prediction 384 443 - -
Lapu1g00983 474 MobiDBLite consensus disorder prediction 26 42 - -
Lapu1g00983 474 Pfam Protein kinase domain 103 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00983 474 MobiDBLite consensus disorder prediction 458 474 - -
Lapu1g00983 474 ProSiteProfiles Protein kinase domain profile. 99 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00983 474 MobiDBLite consensus disorder prediction 455 474 - -
Lapu1g00983 474 Gene3D Phosphorylase Kinase; domain 1 70 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00983 Lapu-Chr1 23079729 23084999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00983 1 376 Glycoside Hydrolase AT3G07070 62.234 2.20e-167 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lapu1g00983 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00983 K13430 - gmx:100305422 808.135