Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00980 ATGGAGAAACTGAATTTTGTGAAGAATGGGGAGCTTAGATTGCCTCCGGGGTTCCGTTTCCACCCAACTGACGAGGAACTGGTTGTGCAATACTTAAAGCGTAAGGTCTTCTCCTGCCCTCTACCAGCCTCCATCATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTCAGAGAAAGAGAGGTACTTCTTCAGCACTAAAGAGGCCAAGTATCCTAACGGCAACCGCTCCAACAGAGCCACCGATTCAGGTTATTGGAAGGCCACTGGGTTGGACAAACAAATTGTAACTTCAAAAGGGAACCAGGTTGTGGGGATGAAGAAGACACTTGTTTTCTACAGAGGAAAGCCACCTCATGGATCCAGAACTGATTGGATCATGCATGAATATCGCCTCCTTAACGCACCCACTTCCTCCCAGTCTCAGAGGCTGAGGCAGAGCCCTGTGGTTCAAGTTCCCATGGAAAATTGGGTCCTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTGATAGAAACGGGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCAGAGTGGATAACCGGAAGGTGAGGAAGTCGAAGATGGTTTTCTATGACTTTTTGGCGCAGAACAAGACTGATTCCTCATCTTCTGCCGCCAGTGGAATTACCCATGAATCAGATGAGCATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATTTTAGAAGAAAACCTTGA 738 0.4756 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGDSEKERYFFSTKEAKYPNGNRSNRATDSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNAPTSSQSQRLRQSPVVQVPMENWVLCRIFLKRRSGDRNGEEKEMESLRGRVDNRKVRKSKMVFYDFLAQNKTDSSSSAASGITHESDEHEESSSSNTFPYFRRKP* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00980 245 MobiDBLite consensus disorder prediction 211 245 - -
Lapu1g00980 245 ProSiteProfiles NAC domain profile. 14 171 IPR003441 GO:0003677|GO:0006355
Lapu1g00980 245 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Lapu1g00980 245 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 215 - -
Lapu1g00980 245 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Lapu1g00980 245 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00980 Lapu-Chr1 23057129 23059939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00980 1 238 NAC Transcription Factor Family AT5G13180 58.015 1.07e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu1g00980 NAM 5.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00980 - - var:108321729 424.476