Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00960 ATGTCTGAGGATGCTGGACCTATGTTGGTAGTTTATGATGATCCCTCCGACCAACACTCACTATCTTTGGATGATGCAAGCAGCACTGAGGAGTCACCTGATGAAACTAGGCTCTCCTTGGAAACAACACATGATGCTATTCCATACATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAAAGGAGTGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAAGATGGAGTTGGAAAAGGACTTACTAGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCCACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGCTGTGGGTGTCAGGCATACATGCGGATTAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTCTTAGAACCAAACCAAGTTCGATTTCTCCCTGCATACAGAACTATCTCGGATGCTGACAAAAATCGAATACTAATGTTTGCCAAAACAGGAATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAAGACGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTGGATTTATTAAGAATGTGCCGAAATATTAAGGAGAAAGACCCCAATTTTAAATTTGATTACACACTTGACGCAAACAACCGTTTGGAGAATATTGCTTGGTCATATGCTTCATCAATCCAATGGTATGATATATTTGGCGATGCTGTGGTATTTGATACAACACACCGCCTAACTGCGTTTGATATGCCGCTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACACTTTTACGGGATGAAACTGTGAGGTCGTTTTCCTGGGCACTGAAGGCTTTCTTAGGGTTCATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCTACAACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCCTGGTTTAATGCTGTTCTAGGGGAACGGTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGTTGGAGGGAAATGGTTTGTTCTTTTGGGCTGAATTCCAATCGGCACATGGTTAATTTATATAGTTCGCGCTCTCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCTGGAATGACTTCAACTGGTCAGTCAAAGTCAATCAATGCTTTCATTCAACGATTTCTGAGTGCACAAACTCGCCTTGCACACTTTGTTGAACAGGTAGCCGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCTATGGAATCACACGCTGCCACAGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGCTGGCTGCACATTATGCATCGTTTTCAATTGAAGATGGTTTTCTTGTGAGGCACCACACCAAAGCTGAAGGAGGTCGGAAAGTTTATTGGGCCCCTCAGGAAGGAATTATAAGTTGTAGCTGCCATCAGTTTGAGTTCACTGGTATTCTTTGTCGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCTATTCGATGGCGTCGTATCAGCGTGCCCTCTTCCAAGTTTCTTCAAAGTGCACCAAACGATCATGCTGAAAGAGTTAAGTTATTACAAAACATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACAAGTTTCCATCCTTCTGTCTCGCATACGAGAGCAACCAATTTCTTTACAAGGTGGCCGAGATATTTCTTCCATTAATAGGAATCTTTGA 2040 0.4127 MSEDAGPMLVVYDDPSDQHSLSLDDASSTEESPDETRLSLETTHDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFDYTLDANNRLENIAWSYASSIQWYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLNSNRHMVNLYSSRSLWALPFLRSHFLAGMTSTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISVPSSKFLQSAPNDHAERVKLLQNMVSSLMTESAKSKERLDIATEQVSILLSRIREQPISLQGGRDISSINRNL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00960 679 Pfam MULE transposase domain 278 370 IPR018289 -
Lapu1g00960 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 653 IPR031052 GO:0006355
Lapu1g00960 679 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Lapu1g00960 679 Pfam SWIM zinc finger 560 587 IPR007527 GO:0008270
Lapu1g00960 679 MobiDBLite consensus disorder prediction 1 34 - -
Lapu1g00960 679 SMART 26again6 564 591 IPR006564 GO:0008270
Lapu1g00960 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00960 Lapu-Chr1 22868917 22876749 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu1g00960 MULE 2.3e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00960 - - gmx:100810717 1349.73