Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00959 ATGTGTGCCATCCGCCAATGGGTGTGGCCCAAACCCAGTAAATGGGTGAAGGGAAAACTGGTTGGATGTGGATCTTTCGGCACTGTCCATTTGGCCATGAACAAATCCACGGGTGCCCTTTTCGTGGTGAAATCGTCCCATTCCAGGGCTGGTCGTGAGGCTTTGGATGAAGAGGTCAAAATCCTCAACACACTCAATTCCTCGCCCTACATCGTGCAGTGTTTAGGCGCAGAGGAGGAGGAGCAGGGCAAACTGAATGTTTTCATGGAGTACATGGCCGGAGGTAGTTTGGCGGACGTGGCGCACAAGTTCGGTGGGTCATTGGAAGAAGAGGTGGTTCGCGTGTATACCAGGGAAATTCTTCACGGCCTAAGCCATCTCCACCTGCATGGCATTGTGCACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGGCCCGCCTGGCGACGTCAAGCTTGCTGATTTTGGCTGTGCCAGAAGGGTCAAGGACTTGTCCAAGTCGATTGGTGGGACCCCTCTTTGGATGGCTCCTGAAGTACTGAGGAACGAGTCTATTGATTTATCTGCGGATATATGGTCCTTGGGTTGCACTGTTATTGAGATGGCTACTGGGTCGCCTCCTTGGTCTCATCTTGTTTCCAATCACATTAGTGCTGTTCTCATGATTGCCCATGGTGATGGGATACCTCAGCTTCCTCCCCATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCTTGTGCTTGCAGAGAGACCCCTCTAAGAGGCCTACTGCTGAGCAGTTACTTACCCATCCCTTTGTTACCTCCACACCTTCTCACCATCAACAAGCTTCCTCCCCCGCCAGCGTCTTGGAGGTTCACAATTTCAAAGACACTTGCGATGTAGATGAATTAGAAAGTCCAGTGGAGAATGATTTCTCACTCACCGACACTTTTTCATCTTACAGTGATTACCCCAAAGGAATATCAGCATGTAAAGCGGAAGACAGTGCTTTGGGCTCATCAGGGAATAATTGGCTTACTGTTAGATCAGGCTGA 1035 0.5014 MCAIRQWVWPKPSKWVKGKLVGCGSFGTVHLAMNKSTGALFVVKSSHSRAGREALDEEVKILNTLNSSPYIVQCLGAEEEEQGKLNVFMEYMAGGSLADVAHKFGGSLEEEVVRVYTREILHGLSHLHLHGIVHCDLKCKNVLLGPPGDVKLADFGCARRVKDLSKSIGGTPLWMAPEVLRNESIDLSADIWSLGCTVIEMATGSPPWSHLVSNHISAVLMIAHGDGIPQLPPHFSKEGLDFLSLCLQRDPSKRPTAEQLLTHPFVTSTPSHHQQASSPASVLEVHNFKDTCDVDELESPVENDFSLTDTFSSYSDYPKGISACKAEDSALGSSGNNWLTVRSG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00959 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 15 299 - -
Lapu1g00959 344 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lapu1g00959 344 SUPERFAMILY Protein kinase-like (PK-like) 8 308 IPR011009 -
Lapu1g00959 344 FunFam MAP kinase kinase kinase18 10 313 - -
Lapu1g00959 344 Gene3D Transferase(Phosphotransferase) domain 1 12 316 - -
Lapu1g00959 344 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00959 344 CDD STKc_MAPKKK 14 266 - -
Lapu1g00959 344 Pfam Protein kinase domain 17 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00959 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lapu1g00959 344 SMART serkin_6 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00959 Lapu-Chr1 22867241 22868275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00959 12 267 MAP Kinase Kinase Kinase AT1G54960 44.649 3.45e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu1g00959 Pkinase 1.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00959 K20716 - gmx:100804518 481.87