Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00956 ATGGGTTGTATATGCTCCAAAGCAAAATCCTCCGACCAATATGTTTCTCAAAACCATCCCAAAGATTTGAAGGCCACTGCATTCCCCAACACCAACCATTTCGGTGACACCGATTGCCTCATATCCAATGCAAATCGAAATTCAAATTCAAATTCAAATGCAACTGAGGAAAAAGCCTCGACCCCAATTTTCTCTCATCAACTTCAGCATAATGGGAACAAGAATGCCAATGGGAATGGGGTGGGATCCACGACACAGACACAGCAACCTCAGATGTGTAGGGCGTATAGTATAACCAGAGGGGAAAGAGGAGTGCAGGTTCTTGCTGGGTGGCCCTCTTGGCTCTCTGCAGTTGCTGGTGAAGCCATTAGTGGTTGGATACCTCGAAGGGCTGATTCCTTTGAGAAGTTGGATAAGATTGGCCAAGGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTTGAAACAAATAAACTCGTTGCATTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGTCAAGGGAAATTATTGTGCTGCGAAGGCTTGACCATCCCAATGTCATGAAGCTAGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCTTGTACCTTATCTTTGAGTACATGGACCATGATCTTGCAGGCCTTGCAGCGATACCTGACATCAAGTTTACAGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCTCGGTCTTGAGCATTGTCACAGTCGTGGTGTTGTGCATCGTGACATAAAAGGCTCAAATATTCTGGTTGACAGTAATGGCAAACTGAAGATTGGTGATTTTGGGCTAGCAACTTTGCTTCAGCCATCTGAGAGGCAGCCTTTAACAAGTCGGGTAGTAACCTTGTGGTACAGACCACCTGAACTTTTGCTTGGAGCTACAGATTATGGAATTACTGTGGATTTGTGGAGTGCTGGATGTATTCTCGCAGAGTTGTTTGTTGGGAAGCCTATAATGTCTGGACGAACTGAGGTGGAGCAACTACATAAAATCTTCAAGCTTTGCGGATCTCCTTCTGAAGAATACTGGAAGAAATCAAAGCTACCACATGCAACAATTTTTAAACCTCAACAACCTTACAAACGTGTTGTTTCTCAGACATTCAAGGATTTTCCTTCATCTACACTGAGCCTCTTGGAGGTCCTTCTAGCTGTTGAATCGAATGGTCGAGGAACTGCATCTTCAGCACTTCGGCATGAGTTCTTCACAACAATGCCACTTCCTTGTGATCCATCATCTTTGCCAAAGTACCCACCGACTAAGGAGTTTGATGCTAAACTTCGCGAAGAGGAAGCTAAAAGAAGAAGAACAGCAAATAAAGGACATGAACATGAATCAGTTGGGAGTAATTTTAGAGAGTCTAGAGCTGTGCCAATACCTGATGCGAATGCTGAGTTTCAGAGACAAGGACAGTGTAATTCTAATTGCGTCACTGAGAAGTACAATTACGAAGAGGATGACGGTTATGGCTTCTCTCGTGAACCTGTAAAGTCAAGAGTACTCAATGTATTTTCTCATTCTGGCGGGTCAATGCATTCAAGTGCTTATGGATCCTCACGCAATATGAACTTGAAAGAGGAAAAAGTCCTCACCTGCCCTGATAATGGCTTTACATCAAGAAAGTCTGAGTTGAGAAAACATCATTCCTATTGGCAAGTTGCCAGAAGATCAATTTGGCATGAGATATAG 1737 0.4341 MGCICSKAKSSDQYVSQNHPKDLKATAFPNTNHFGDTDCLISNANRNSNSNSNATEEKASTPIFSHQLQHNGNKNANGNGVGSTTQTQQPQMCRAYSITRGERGVQVLAGWPSWLSAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYKARDLETNKLVALKKVRFANMDPESVRFMSREIIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMDHDLAGLAAIPDIKFTEAQIKCYMQQLLLGLEHCHSRGVVHRDIKGSNILVDSNGKLKIGDFGLATLLQPSERQPLTSRVVTLWYRPPELLLGATDYGITVDLWSAGCILAELFVGKPIMSGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSQTFKDFPSSTLSLLEVLLAVESNGRGTASSALRHEFFTTMPLPCDPSSLPKYPPTKEFDAKLREEEAKRRRTANKGHEHESVGSNFRESRAVPIPDANAEFQRQGQCNSNCVTEKYNYEEDDGYGFSREPVKSRVLNVFSHSGGSMHSSAYGSSRNMNLKEEKVLTCPDNGFTSRKSELRKHHSYWQVARRSIWHEI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00956 578 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Lapu1g00956 578 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00956 578 CDD STKc_CDK9_like 134 418 - -
Lapu1g00956 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Lapu1g00956 578 PANTHER CELL DIVISION PROTEIN KINASE 132 424 - -
Lapu1g00956 578 MobiDBLite consensus disorder prediction 68 90 - -
Lapu1g00956 578 MobiDBLite consensus disorder prediction 446 466 - -
Lapu1g00956 578 Gene3D Transferase(Phosphotransferase) domain 1 217 458 - -
Lapu1g00956 578 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00956 578 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Lapu1g00956 578 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Lapu1g00956 578 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00956 578 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Lapu1g00956 578 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00956 Lapu-Chr1 22845545 22854713 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00956 126 456 Core Cell Cycle Gene Families AT5G10270 48.266 1.29e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu1g00956 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00956 - - gmx:100805055 860.907