Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00953 ATGGCTCTGATCCTGCACGCACCCAAAAGAACCAAAAATGTTTTTAAGACTCTCATCGCGTCGGAGTACAGTGGCGTCCAACTGGAATTTGCCCCTGATTTCGAGATGTCTGTCTCCAACAAAACTCCTGACTTTCTGAAGATGAATCCTATTGGAAAGACTCCTGTGTTGGAAACGCCCGATGGTCCCATCTTTGAAAGCAATGCTATTGCTCGTTACGGTATGTCTGTGTGCAATTCCATGAATCATTTAACTTTTCCTTCTTTATTATCTGCATCTTTTTTCCAATCAAATGCAAATCGGCATCCTCTTTTCTTTCCTGCAGTTGCTCGACTCAACGGTGACAAGCCATTACTTGGATTTGCTCCTTACCTTCCACCCGCCGAGGAGGCTGCAAATGCTGCGTTGAAGAGAGCATTCGGGGCCTTGAACACTCACCTTGCCTCCAATACATACCTGGTTGGCAATTCCGTTACCCTTGCTGACATCATAACCACATGCAACCTGTATCTCGGTTTCACCCAGATCTTAGTCAAGAGCTTCACTTCGGAGTTCCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAACCAGCCTAATTTCCGAAAGATACTAGGTCAGGTTAAGCAAACAGACGCTGTTCCACCTGTTCCATCTGCCAAGAAGCCTTCGCAGCCTAAGGAGTCTAAGCCCAAGCCTAAGGATGAGCCAAAGAAAGTGGCTAAGCCAGAGCCAGAAAAGCCCAAAATAGAGGCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAAAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGGTATTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGGATTCTGGGACATGTATGATCCAGAGGGTTATTCTCTCTGGTTCTGTGATTACAAATACAATGACGAGAACACTGTTTCCTTTGTGACATTAAACAAGGTTGGTGGTTTTCTTCAGCGGATGGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTGTGATTGGATCACAGGGACCATTCAAGGTGAAGGGGTTGTGGCTTTTCCGCGGGCAGGAGATTCCGCAATTTGTGATTGATGAATGCTATGATATGGAGCTGTACGAGTGGACCAAGGTTGACATCTCTGATGAAACTCAGAAAGAGCGGGTCAATCAGATGATAGAGGATTATGAACCGTTTGAGGGAGAGCCTCTTTTGGATGCCAAATGCTTCAAGTGA 1266 0.4621 MALILHAPKRTKNVFKTLIASEYSGVQLEFAPDFEMSVSNKTPDFLKMNPIGKTPVLETPDGPIFESNAIARYGMSVCNSMNHLTFPSLLSASFFQSNANRHPLFFPAVARLNGDKPLLGFAPYLPPAEEAANAALKRAFGALNTHLASNTYLVGNSVTLADIITTCNLYLGFTQILVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTDAVPPVPSAKKPSQPKESKPKPKDEPKKVAKPEPEKPKIEAEEEAPKPKPKNPLDLLPPSKMVLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQGPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDETQKERVNQMIEDYEPFEGEPLLDAKCFK* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00953 421 CDD GST_C_EF1Bgamma_like 117 212 - -
Lapu1g00953 421 SUPERFAMILY Thioredoxin-like 2 73 IPR036249 -
Lapu1g00953 421 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Lapu1g00953 421 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 421 IPR044628 GO:0004364
Lapu1g00953 421 Pfam Glutathione S-transferase, C-terminal domain 130 199 IPR004046 -
Lapu1g00953 421 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 261 421 IPR001662 GO:0003746|GO:0006414
Lapu1g00953 421 SMART EF1G_2 260 368 IPR001662 GO:0003746|GO:0006414
Lapu1g00953 421 Pfam Glutathione S-transferase, N-terminal domain 12 73 IPR004045 -
Lapu1g00953 421 Gene3D - 98 215 - -
Lapu1g00953 421 FunFam Elongation factor 1-gamma 1 261 421 - -
Lapu1g00953 421 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 83 217 IPR010987 -
Lapu1g00953 421 MobiDBLite consensus disorder prediction 225 261 - -
Lapu1g00953 421 SUPERFAMILY eEF1-gamma domain 261 421 IPR036433 GO:0003746|GO:0006414
Lapu1g00953 421 Pfam Elongation factor 1 gamma, conserved domain 260 368 IPR001662 GO:0003746|GO:0006414
Lapu1g00953 421 SUPERFAMILY GST C-terminal domain-like 105 213 IPR036282 -
Lapu1g00953 421 Gene3D Glutaredoxin 1 73 - -
Lapu1g00953 421 MobiDBLite consensus disorder prediction 212 268 - -
Lapu1g00953 421 FunFam Elongation factor 1B gamma 1 73 - -
Lapu1g00953 421 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 261 421 IPR036433 GO:0003746|GO:0006414
Lapu1g00953 421 CDD GST_N_EF1Bgamma 5 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00953 Lapu-Chr1 22838738 22847767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00953 1 421 Eukaryotic Initiation Factors Gene Family AT1G57720 70.546 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00953 K03233 - gmx:100795680 599.356