Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00931 ATGGAAGAGTTTGAGTACGAAGAGGTTGTAAGAGCAACACAAAACTTCAACCCTAGAAGGATCATAGGGAAAGGAAGCCATGGGATGGTTTACAAAGGCGTTGTTCAATTCAAAGAAAGCAACAGGTTGGTCGCTGTAAAGAAGCCATCGCAAGGCCTTCAATCTCTTCACGACAACTCCAAACTCCAAAACGAAATCCGAGTTCTATCCTCTCTAAGTGAAAACCCTCACGTCGTTAATCTTCTAGGAACCACGAGTGGTGATGATCACAGCCACAAAGTCATTGTGATGGAGTTCATGCCCAATGCCTCTCTCCATGACTTGCTTCATGTCAGTGAAACCCCACCCACGTGGCCTAAACGCGTTGAAATCGCCATGCAAATCGCTCGTGCGGTGCAGTTTCTTCACCAAGGGAAGCCTGTGGTGATTCACAGAGACATTAAACCCTCCAACATATTGTTTGATTCACGTTGGAATGCGAAGTTGGCAGATTTTGGACTGGCGGTGAAAGGGGTTGACCCGGTGAGTCAACCCGCTGGGACAATAGGGTACTTGGACCCGTGTTACACCACCCCAGATAAACTCAGCACCAAAAGCGATATTTTCAGCTTTGGGGTTGTGTTGTTGGAGATCATAAGTGGTAGAAAGGCCATTGACGTGTGCAAAACGCCGGCTTCAGTTGTGGAATGGGCGATTCAGTTAATGAATGAACAACTTCTGAAAGAGATTTGTGACACCAGAGTGGCACTGCCAGGTTATATGGTTGGAACAGTCACTCGCTTGTTACGCTATGCTTCACGTTGTGTGTCAGAAAATGAAGATGAACGTCCTTCAGCAAGTGAAGTTGTTATGGGAATGGAAAATTGGTTGGTGAAAGGAGTCAGGTTCCCCGCTTGGACGTGTGTTTTGAAGGGGTTGGTTTGGTTGAGAAAGAGGAAGCTGATGGTGGGTATTGCTTGGCAAACTCAGACACGGATTCGGTGTATAGCAGAAGAAGAGGGTGAGGTGGATGGTGATGGTGATGGTGATGGTGATGGTGTTGGTGTTGGTGTTGGTGTTGGTGTCCCAAGTGGGAAGATATCCATGACCATAAGGGAGGTTTTGGCTGATGTTACATTGGAGTGA 1125 0.4711 MEEFEYEEVVRATQNFNPRRIIGKGSHGMVYKGVVQFKESNRLVAVKKPSQGLQSLHDNSKLQNEIRVLSSLSENPHVVNLLGTTSGDDHSHKVIVMEFMPNASLHDLLHVSETPPTWPKRVEIAMQIARAVQFLHQGKPVVIHRDIKPSNILFDSRWNAKLADFGLAVKGVDPVSQPAGTIGYLDPCYTTPDKLSTKSDIFSFGVVLLEIISGRKAIDVCKTPASVVEWAIQLMNEQLLKEICDTRVALPGYMVGTVTRLLRYASRCVSENEDERPSASEVVMGMENWLVKGVRFPAWTCVLKGLVWLRKRKLMVGIAWQTQTRIRCIAEEEGEVDGDGDGDGDGVGVGVGVGVPSGKISMTIREVLADVTLE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00931 374 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Lapu1g00931 374 Gene3D Transferase(Phosphotransferase) domain 1 100 294 - -
Lapu1g00931 374 ProSitePatterns Protein kinases ATP-binding region signature. 22 48 IPR017441 GO:0005524
Lapu1g00931 374 SMART serkin_6 16 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00931 374 SUPERFAMILY Protein kinase-like (PK-like) 4 284 IPR011009 -
Lapu1g00931 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lapu1g00931 374 ProSiteProfiles Protein kinase domain profile. 16 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00931 374 PANTHER OS01G0253100 PROTEIN 2 286 - -
Lapu1g00931 374 FunFam Serine/threonine-protein kinase-like protein At5g23170 100 295 - -
Lapu1g00931 374 Pfam Protein kinase domain 19 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00931 Lapu-Chr1 22689734 22691333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00931 4 298 Receptor kinase-like Gene Family AT3G59420 39.344 4.73e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lapu1g00931 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00931 - - gmx:100305389 434.876