Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00919 ATGTGCTGTTTGGTTGCTACTCAAATGAGACAAGGTGAAGCCAATTCTGTTCGGGTTGTTAAAGAGAATAATAAGAATTGGTTGCAGCATGCCAATGCTCACGAGAATTTCTCCTCCCAAGAGAAATTTTTGAGCTCCAATTTTCTGTTCTCTGTCCCATCTAAGAAGCCCCGCCACCAAGAACCAAACCCTGGGACTGCCGGGTTTGTATTTCGACGAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATGTGACAAGGCTTGGGGTGCTCTTTCAAGTCTACAAAATTCACGTAGGAACTATGTCCCGCCTGGAAAAACTGTCAAGGTTACTCGACAGCTTCATGAAGATACGAGAACAACTCCCTTCCATGGAGGCTATGAGAATGACAACCGTATGTGTCCTGATGCCACTGCTATTCCAGTTGTTAGCAGTCATAGTTCTTGGGGTCTGGATGGTTCAGTGAACAATCATACTAAGTACACAGGCCAAATCAACCAGTCTTCCAACTGCATGTCCGGAGATATTGACGATGATAACATACTTGAGAGCATTGATATTGACCAAATTGTTGAGAAATACCAGTCAACCTGCACTCCCAAGCCATCGATATCCAAGCTTCCTCCTATAACGCCAACTGCAGATAAAGATGATTTTGCTAGGCAGGGGGATAATGTGTTGCCACCAGACCTGTGTTTAGATTGCATCCATGGGTACAAGTTAGGGCTTTGCCCTGAAGCAGCAATCCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATGGTGAAAACCTGAATTCTACACAGATAACAAAGCTTCGCCATGATAGGTCACAGTTGAATAAGCAAATTCAACAACTAGAAAAATATATTCAATCTGGTAATCTTAACGAGGAAAGGCAAAAGTCACATTTTTCTGCGTCCACGATACCATCTACATCATTTGTGTATGGAACACCTCAGCAAACTGCCCCCTGTAATGGATCCAAGAGATATGATACTCAGGCTTATATGGGTAACGAGACATGTGGTTCATCGTTCCAGTCTGTTCCATCTTTTTCTGTTGACAACTATAACATATCATCTGGTCCAGTGGAACGGGAAGCGTTCATCCCAAAGGTTATTGAAGTTAATTACATCGAAGGTTCTGGAGACAAACGCTGGAGCAGCCGCGATTTTTCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCGGCTCTTATTTGTCACGGTATAACATTAGTAATTTCTCCCCTCGTGTCCCTTATTCAGGACCAAATAATGCACTTATTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGCGACACTTGGAGAATTTACATTTTCGCGAGTTGCTTGCAAGGATTGTAATTGACGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGTGTAAAAGAAGATGTCGTGCAAGCACTTGGTCTTATTAACTGCGTTGTTTTTCGGCAAAGTTTTAATCGGCCAAACTTATGGTATTCTGTTGTCCCCAAGACCAAGAAGTGTTTGGAGGACATCGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTGACAATTTACAGGAATGTGGACATAAGTGTGCATTTTACCACGGTAGCATGGATCCTGCCCAACGTGCCTCTGTTCAAAAGCAGTGGAGCAAAGATGAAATCAATATAATTTGTGCTACTGTAGCATTTGGAATGGGTATTAATAAACCTGATGTCCGCTTTGTAATCCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGGTCATCCTGTGTACTATATTATAGCTATAGTGATTATATACGAGTCAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTCCCATGACATCTGGATACAACCGTTCAAATGTGATAAATCCTGGAAGCATACTAGAAACAAACACTGCAAACCTTATGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGTTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGCCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTCACGGAGACCGCAAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTTTATCGGGGCTCCTTTAGCCAAATGGTCAAGAAAAATCGGCATGAGACAGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTCGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTTTTATGGATCGGTATCATCAATATTGAAGGTAAATGAACTCAAGGTCCGTAATCTGTTTGCTGGGCACAGAATTATATTGAGATTTCCATCCTCTGTAAAGGCATCAAAACCAGGAAAATCTGATGCAACTCCAGCCAAGGGTTCTTTGACATCTGGGAAGCTGAATGCTATTCTAATTAACACTCCTCAGTCTCAAACTGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTTAAAGAAGCTGGAGAGAGTGTTTTTGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTCGATATCAATGGCATTGGCAAGGCAAAGGTAAACAAGTATGGGGATAAGATACTGGAAACCATTGAGAATACCATAAATGAATATTACAAGTTGGACAAAGCCAGTAGCGGCAGCAAAGGCAGTGCAGATTCTGCCAAAAGGAGACGAGAGTCAAACGGAGATCCAGATGCAAATGCTGAGGACGATGACCCCCTCACCAATAGTACAGGTCGTTCTAAGAAAAGGACTATAAAGAGACAAAATAGAAAAGCTGTGATATATGATTCTGCAGAGGAAGATTATTTTCATGGATGCCCTGACGAAGACCTAGATTTCGACCTCATAGAGATTGATGCATTAGATCAAGTGACTTGTAAAAATGCTGCTTGA 3480 0.4124 MCCLVATQMRQGEANSVRVVKENNKNWLQHANAHENFSSQEKFLSSNFLFSVPSKKPRHQEPNPGTAGFVFRRSENIQVSQRVQCDKAWGALSSLQNSRRNYVPPGKTVKVTRQLHEDTRTTPFHGGYENDNRMCPDATAIPVVSSHSSWGLDGSVNNHTKYTGQINQSSNCMSGDIDDDNILESIDIDQIVEKYQSTCTPKPSISKLPPITPTADKDDFARQGDNVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQITKLRHDRSQLNKQIQQLEKYIQSGNLNEERQKSHFSASTIPSTSFVYGTPQQTAPCNGSKRYDTQAYMGNETCGSSFQSVPSFSVDNYNISSGPVEREAFIPKVIEVNYIEGSGDKRWSSRDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICHGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLINCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVADNLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGAIEQSPMTSGYNRSNVINPGSILETNTANLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTETAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHGAGKHLAKGEASRILHHLVVEDILVEEVKKSDFYGSVSSILKVNELKVRNLFAGHRIILRFPSSVKASKPGKSDATPAKGSLTSGKLNAILINTPQSQTEVDLNLSAKLYTALRMLRTTLVKEAGESVFAYHIFGNATLQQISKRVPRTKEELLDINGIGKAKVNKYGDKILETIENTINEYYKLDKASSGSKGSADSAKRRRESNGDPDANAEDDDPLTNSTGRSKKRTIKRQNRKAVIYDSAEEDYFHGCPDEDLDFDLIEIDALDQVTCKNAA* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00919 1159 FunFam ATP-dependent DNA helicase RecQ 393 610 - -
Lapu1g00919 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 428 603 IPR014001 -
Lapu1g00919 1159 SMART helicmild6 653 734 IPR001650 -
Lapu1g00919 1159 SMART hrdc7 986 1068 IPR002121 GO:0003676
Lapu1g00919 1159 MobiDBLite consensus disorder prediction 1071 1119 - -
Lapu1g00919 1159 Gene3D - 384 610 IPR027417 -
Lapu1g00919 1159 Gene3D HRDC domain 985 1074 IPR044876 -
Lapu1g00919 1159 SMART ultradead3 416 619 IPR014001 -
Lapu1g00919 1159 ProSiteProfiles HRDC domain profile. 986 1068 IPR002121 GO:0003676
Lapu1g00919 1159 NCBIfam RecQ family ATP-dependent DNA helicase 412 887 IPR004589 GO:0004386|GO:0006310
Lapu1g00919 1159 SMART RQC_2 836 946 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lapu1g00919 1159 Pfam DEAD/DEAH box helicase 422 590 IPR011545 GO:0003676|GO:0005524
Lapu1g00919 1159 Pfam Helicase conserved C-terminal domain 627 733 IPR001650 -
Lapu1g00919 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 877 IPR027417 -
Lapu1g00919 1159 Pfam RecQ zinc-binding 745 827 IPR032284 -
Lapu1g00919 1159 Coils Coil 278 298 - -
Lapu1g00919 1159 PANTHER DNA HELICASE RECQ FAMILY MEMBER 389 1078 - -
Lapu1g00919 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 771 IPR001650 -
Lapu1g00919 1159 Gene3D - 834 943 IPR036388 -
Lapu1g00919 1159 Pfam HRDC domain 990 1058 IPR002121 GO:0003676
Lapu1g00919 1159 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 542 551 IPR002464 -
Lapu1g00919 1159 FunFam ATP-dependent DNA helicase Q-like 4A 834 944 - -
Lapu1g00919 1159 FunFam Bloom syndrome, RecQ helicase 611 831 - -
Lapu1g00919 1159 CDD DEXHc_RecQ 411 610 - -
Lapu1g00919 1159 Pfam RQC domain 833 947 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lapu1g00919 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 752 IPR027417 -
Lapu1g00919 1159 CDD SF2_C_RecQ 611 743 - -
Lapu1g00919 1159 FunFam ATP-dependent DNA helicase Q-like 4A 982 1068 - -
Lapu1g00919 1159 Gene3D - 611 830 IPR027417 -
Lapu1g00919 1159 SUPERFAMILY HRDC-like 989 1062 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00919 Lapu-Chr1 22615928 22623796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00919 642 765 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 5.11e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00919 K10901 - gmx:100800006 1954.49