Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu1g00915 | ATGATTTTTTGTGTGATCAACGAACAAGGAAGAGACAGGAATGTTAACAGTGCATTATGGGATGCTATAGCATCAAAACATTACTCCATATTCAGGATCATCTTCCACCATGCTGCTCTTCGGAATCAGAACATGGCAGGCGATCTCCTGTGTAGAGCAGCCAAAAAAAATGAACTAACAGTGATGAAAGATCTTCTGAAACAAGGACTAAACGTTAACTCAAGAGATGGTCGTAATGCAACACCAATCCAAGTTGCCATAACAGAAGGTCATGTAGAAATGGTTTGGTTTCTTGTAATGAATGGTGCAGATGTGTCTGATTGTTCATCCATCATAAACCAAATGCTACAGAAACGTAAAATAGGACATCTAATTGAGTTCATGCCTGGTGAAATTATATTAAAGGGGAGACATCAAGAGGAGAAGTACATTGGAAGAAGATATAACAGACCAATAATTCCAAGAGTAACTATATACAGAGGTCACCCTGCATTAAGAAAAGAAAAGGGTGTCACACAAGCTGGGAAGGTAATAAGGTTGCCTGATTCATTTGAGGAACTCAAAACTATTGCAGGT | 576 | 0.3872 | MIFCVINEQGRDRNVNSALWDAIASKHYSIFRIIFHHAALRNQNMAGDLLCRAAKKNELTVMKDLLKQGLNVNSRDGRNATPIQVAITEGHVEMVWFLVMNGADVSDCSSIINQMLQKRKIGHLIEFMPGEIILKGRHQEEKYIGRRYNRPIIPRVTIYRGHPALRKEKGVTQAGKVIRLPDSFEELKTIAG | 192 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00915 | 192 | PANTHER | POTASSIUM CHANNEL AKT1 | 9 | 192 | IPR045319 | GO:0005249|GO:0006813 | |
| Lapu1g00915 | 192 | Pfam | Ankyrin repeats (3 copies) | 24 | 105 | IPR002110 | GO:0005515 | |
| Lapu1g00915 | 192 | Gene3D | - | 5 | 121 | IPR036770 | - | |
| Lapu1g00915 | 192 | ProSiteProfiles | Ankyrin repeat profile. | 78 | 110 | IPR002110 | GO:0005515 | |
| Lapu1g00915 | 192 | Pfam | KHA, dimerisation domain of potassium ion channel | 154 | 192 | IPR021789 | - | |
| Lapu1g00915 | 192 | ProSiteProfiles | Ankyrin repeat region circular profile. | 78 | 106 | - | - | |
| Lapu1g00915 | 192 | SUPERFAMILY | Ankyrin repeat | 12 | 106 | IPR036770 | - | |
| Lapu1g00915 | 192 | SMART | ANK_2a | 14 | 43 | IPR002110 | GO:0005515 | |
| Lapu1g00915 | 192 | SMART | ANK_2a | 78 | 107 | IPR002110 | GO:0005515 | |
| Lapu1g00915 | 192 | SMART | ANK_2a | 45 | 74 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu1g00915 | Lapu-Chr1 | 22584223 | 22584878 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00915 | 3 | 105 | Ion Channels | AT2G25600 | 33.636 | 1.26e-12 | 63.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu1g00915 | K21867 | - | pvu:PHAVU_006G215800g | 361.303 |