Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00912 ATGAAGGTTGTTGTGATGATGATGTTGCTACCCTTGATGTTTGCAGTGTTTTCTTGCATGAGTTTGAGTTCAGCAGCGCCCTCTCCATCCACAACAACCACATGTCCCATCGACTTGAATTACGTGCTGAGAATCCCATGGAACACTTCTGTTTGCCACAACTTCCAACAAAATTTGGCAGCAAAAAATGGAACAGATGCAAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCATAGGACTTGCACAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCATGCATCGAAGATTTCCAATCTAAGCTGTCCTCCCTCTCTCTCCCCAACAACCTTGCCGACTCCTGCTTTGTCCCTCTTCAGTTTGTGATCTCCCCCAACATCTGTGCTGGGATTCAAACCATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACACCACTCAACACTGCTTGCAAACCGGATCTCACTGATCTCTCTCACTGTGATTTGTGTCTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCCATAGATGGTAATGCTTCACATTCCATAGATTGTTTTTACTTTGCCATTCTCTATGCTGCTGGGATTGTGAATGAGTATGGACCTGAAAGCAATGGTGCTGTGACTTGTATTTTTAGCATGTCGGTTTATTCACAAGGGGGGTCTGGGGGAAAGAGTCACCAGGCTCTTGTGTTTGGGTTGGCAGGAGCTGGGGTCGCTTTGCTGGTGATGTCTTCTCTGCTGGGGCTTTATGTGTGGTATGACAGGAAGCACAGGAGGAAAGAGCTTGATACTTTTCAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGTAGATTAAGGCCCAATACGGGGTCCATTTGGTTCAAAATTAGGGAACTTGAGAAGGCCACTGATAATTTTTCATCTAAGAACTTCATTGGCCGAGGTGGGTTTGGGTTGGTTTTCAAGGGAACCTTGCCTGATGGGACTGTTGTGGCGGTTAAAAGGATATTGGAATCTGATTTTCAAGGAGATGTGGAATTCTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCATCGGAATCTGGTGCCTCTAAGAGGTTGTTGTGTGGCTGAGGAGAGTGAGAACTATGATGAAAGAGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACCTGGAGGATCATCTCTTTGTGTCACCGGACTCTCAGAAAGCAAAGGGATCATTGACGTGGCCTCAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATTTGCACTATGGAGTTAAACCTGCAATTTTCCATAGGGATATCAAGGCCACCAATATACTACTTGATGAGGATATGAGGGCAAGAGTTGCCGATTTTGGTCTTGCAAAACAAAGCCGGGAGGGTCAGTCTCATCTCACTACCAGAGTGGCTGGAACTCATGGATATCTAGCCCCGGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTCTATAGTTTTGGTGTGGTTGTTTTGGAGATTATGTGTGGGAGAAAGGCTCTTGACTTGTCTTCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAGGCTGGGAAGTTAGAAGAGGCTCTAGATGGTTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGGATTCTATGCTCCCATGTGATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCTCAAATCCCAGATCGCCCTATGCCTCTTGGTCACCCTTCCTTTTATAATGATGGCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCCCAAGTTGCAAACTGGAGACATGCTCAGGTAA 1956 0.4596 MKVVVMMMLLPLMFAVFSCMSLSSAAPSPSTTTTCPIDLNYVLRIPWNTSVCHNFQQNLAAKNGTDANTCCISLLSLFGIGLAQHLKETSQFQLPNLATSVSCIEDFQSKLSSLSLPNNLADSCFVPLQFVISPNICAGIQTISDWTKKLGQSTPLNTACKPDLTDLSHCDLCLGAGLQVKQELISIDGNASHSIDCFYFAILYAAGIVNEYGPESNGAVTCIFSMSVYSQGGSGGKSHQALVFGLAGAGVALLVMSSLLGLYVWYDRKHRRKELDTFQFDFDPEEQGSRRRLRPNTGSIWFKIRELEKATDNFSSKNFIGRGGFGLVFKGTLPDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESENYDERGSQRYLVYDYMPNGNLEDHLFVSPDSQKAKGSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKLEEALDGSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNDGSTFSISPALSGPKLQTGDMLR* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00912 651 ProSiteProfiles Protein kinase domain profile. 314 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00912 651 CDD STKc_IRAK 320 607 - -
Lapu1g00912 651 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Lapu1g00912 651 Gene3D Transferase(Phosphotransferase) domain 1 399 613 - -
Lapu1g00912 651 Pfam SPARK 31 198 IPR043891 -
Lapu1g00912 651 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 399 613 - -
Lapu1g00912 651 SUPERFAMILY Protein kinase-like (PK-like) 298 638 IPR011009 -
Lapu1g00912 651 Pfam Protein kinase domain 316 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00912 651 SMART serkin_6 314 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00912 651 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lapu1g00912 651 FunFam probable receptor-like protein kinase At1g11050 277 398 - -
Lapu1g00912 651 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 57 623 - -
Lapu1g00912 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Lapu1g00912 651 Gene3D Phosphorylase Kinase; domain 1 284 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00912 Lapu-Chr1 22543791 22546535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00912 26 651 Receptor kinase-like Gene Family AT1G11050 65.710 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lapu1g00912 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00912 - - gmx:100806560 1170.61