Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00911 ATGAACGTTGGAGAGAGTAATGAAGCACCAAATTCAAAGGTTCATGACTTCGACTTAAACATTCCATGTGTGGAGAACCACCCATCTCCAAACACCATTCAAGTTTTGTATGGGTGTGAAGAGAAGCTGATAGAGGAGGGAATTGCAGTTCAGCATGCGGCTCAAGTGGAAACAAATATTGGAGCAAATTCTGGTGCTGAAGCTGCTATCTCTGTCTTTGCAACACCCAGTTCCTCACAACGAGGCCGCCGCCGCCGCCACCATCGCCGCCATCATCAACATGATGGTGGTGGAGATGCTAAGCAGAACAGTAGCGATCCAGGTAGATTCTGCACAAATTTTATGTGTAGGACAAGAAGAACTCCAATGTGGCGTAAGGGACCTCTGGGACCAAAGACTCTGTGCAATGCTTGTGGGCTTCAATACATTAAGACTGTGAAGAGGAGAGGAGGAGACCCACCGGCTACAGTTCCAGGTGCAGGTGGTGCTTCCACTGTTCATGATGATGATGTTGATGATGATGATGGTGATGGTGATGGTGATGGTGCTTCTCATGGTCCTGTCCCACATGAAACAGAGGAAGGAGAAAGTCTCTAA 597 0.4791 MNVGESNEAPNSKVHDFDLNIPCVENHPSPNTIQVLYGCEEKLIEEGIAVQHAAQVETNIGANSGAEAAISVFATPSSSQRGRRRRHHRRHHQHDGGGDAKQNSSDPGRFCTNFMCRTRRTPMWRKGPLGPKTLCNACGLQYIKTVKRRGGDPPATVPGAGGASTVHDDDVDDDDGDGDGDGASHGPVPHETEEGESL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00911 198 MobiDBLite consensus disorder prediction 74 107 - -
Lapu1g00911 198 Pfam GATA zinc finger 115 144 IPR000679 GO:0006355|GO:0043565
Lapu1g00911 198 ProSiteProfiles GATA-type zinc finger domain profile. 105 142 IPR000679 GO:0006355|GO:0043565
Lapu1g00911 198 CDD ZnF_GATA 110 165 IPR000679 GO:0006355|GO:0043565
Lapu1g00911 198 PANTHER OS01G0976800 PROTEIN 100 148 - -
Lapu1g00911 198 MobiDBLite consensus disorder prediction 148 198 - -
Lapu1g00911 198 SMART GATA_3 105 162 IPR000679 GO:0006355|GO:0043565
Lapu1g00911 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 151 - -
Lapu1g00911 198 Gene3D - 105 155 IPR013088 GO:0006355|GO:0008270
Lapu1g00911 198 MobiDBLite consensus disorder prediction 180 198 - -
Lapu1g00911 198 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00911 Lapu-Chr1 22539770 22540692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00911 111 150 C2C2-Gata Transcription Factor Family AT3G20750 57.500 6.06e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu1g00911 GATA 3.5e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00911 - - gmx:102663335 129.028