Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00907 ATGGGAAGAAACGGAGGAGGAAGGTCTCTGCAACAAGCCCTCCGTCGCCGTATTGAGACCTGCAAGGCCAAATACTCCACTGCCGAAGAAATCGCCAGCCATCTCCGTTCAAATTACCCAGATTACCACCGAACTAAACACCAAACCCTAATTCGTTTTGTTCAGGAAGCGCTTCATTCCACCGCGAAGCATAATCACACTCCCACGCCCAAGTTTTCCGATGGTGATGGTGACGGTGACGATAACATAGAATCCCGAAGCGCGTCTCGAAAGCGTCGGAAGAAAATCGACGAGGGTGAAGAGAAGTTGAAAAAGATGGAAGCGTTACACGTGCGAAGGAGGGTGCAGAATGCTTCCTCATCGTCCTCTGCTTCTTCGGAGAGTGATGATGAGGAAACGGTGTCGACTTCGGAGGACGCAATTTACGGGGAGAAGGTGGAGCCTGAGTTTGATTTGATGAAGGAAATGCTAAGGAAGACGTATACGCCGAAGAAGGTGGTGGTGGTGGCGGCGGCGGCGGAGGAAAAGAACGTTGAAATGGAGATGAGTAATAGAAGTAAAGGAACTGTTGTGAATGAGGTGAATGAGGTGAGGAAGCAATCTCCGCTTTCGGTTTCGAATGGTGAGGTTTCAAATGGTGAGGTGAAGAGGAAGGATGGACCGAGATTTAAGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAAGTGATTGTACCCTTGTTTCATCCCCAATTGCCTAGGCAGTTAGGAGTGAAGCCAATGGCTGGCATTTTGTTGCATGGTCCACCTGGATGTGGGAAGACCAAACTTGCTCATGCTATAGCTAATGAGACTGGTCTTCCTTTCTATCAGATTTCAGCTACCGAGGTAGTCTCTGGAGTCTCAGGTGCATCTGAAGAAAATATTAGAGAACTTTTTGCTAAAGCTTACAGAACTGCACCTTCGATTGTCTTTATTGATGAGATTGATGCAATTGCTTCTAAAAGAGAGAACTTGCAGCGTGAGATGGAGAAACGAATTGTGACGCAATTAATGACTTGCATGGATCAATCAAATAGGCTTGTTCAACCAGCGGATGATTCAGAGAGTGCTGGCTATGTTCTTGTAATAGGAGCTACAAATAGGCCTGATGCTGTTGATCCTGCCTTGAGAAGGCCTGGCCGGTTTGATCGTGAAATTATCATTGACCATCCTGATGAATCTGCCAGGGAGGAGATCCTGTCAGTGCTTACTTCCAATCTTAGGCTTGACGGTTTATTTGATCTACAGAAAATAGCCAGAGCTACATCAGGATTTGTGGGTGCTGATTTGGCAGCTCTGGTTGACAAGGCTGGTAATCTGGCCATGAAGAGAATAATTGATGAAAGGAGACGTGAATTATCTCAAGATCTCATGAGCGAGCATGTTGAAGACTGGTGGAGGGAACCTTGGTCGGCTGAAGAAGTAGACAAGCTTGCCATCAAAATGTCCGATTTTGAGGAAGCATCCAAAAAGGTACAACCTTCATTAAGAAGAGAAGGATTCTCTATCATTCCTAATATAAAATGGGACGACGTTGGGGGGCTTGATCTTTTAAGAAAGGAGTTTGAACGATATATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGGGCTTGGGGTTGATCTTGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACGCTGATTGCCAAAGCTGTTGCCAGTGAGGCAGGGGCTAGTTTTATTCATATTAAGGGTCCCGAGCTTTTAAATAAATACGTGGGAGAAAGTGAGCTTGCAGTTCGAACATTGTTTAGCCGTGCAAGGACATGTGCGCCTTGTATACTTTTTTTCGATGAGGTTGATGCTTTGACAACAAAACGTGGTAAGGAAGGTGGTTGGGTTATTGAGCGACTGTTGAACCAGTTGCTTATTGAGTTGGATGGTGCCGGGCATCGACGAGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTCTCTTGAGGCCTGGTAGATTTGGTAAACTTCTTTACGTTCCGCTACCCAGCCCAGATGAGCGAGTTTTGATATTGAAAGCTCTTTCAAGAACTAAGGCTATTGATGCCACCGTGGATTTGAGTGCGATAGCAAGAATGGAAGGCTGTGAAAACCTAAGCGGCGCTGATCTTGCTGCATTGATGAATGAAGCGGCAATGGCTGCTGTGGAAGAGAGATGTAAAACTATCAACAGTAATCATTTTGAGGTGGCACTAAGTAAAGTCTCGCCGTCAGTGTCTGACAGGCAAAAGCAGTACTATCAGCACTTGTCGGAGAGCTTTAAAGCAGCATGA 2352 0.4583 MGRNGGGRSLQQALRRRIETCKAKYSTAEEIASHLRSNYPDYHRTKHQTLIRFVQEALHSTAKHNHTPTPKFSDGDGDGDDNIESRSASRKRRKKIDEGEEKLKKMEALHVRRRVQNASSSSSASSESDDEETVSTSEDAIYGEKVEPEFDLMKEMLRKTYTPKKVVVVAAAAEEKNVEMEMSNRSKGTVVNEVNEVRKQSPLSVSNGEVSNGEVKRKDGPRFKDLGGMKEVLEELKMEVIVPLFHPQLPRQLGVKPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVVSGVSGASEENIRELFAKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRLVQPADDSESAGYVLVIGATNRPDAVDPALRRPGRFDREIIIDHPDESAREEILSVLTSNLRLDGLFDLQKIARATSGFVGADLAALVDKAGNLAMKRIIDERRRELSQDLMSEHVEDWWREPWSAEEVDKLAIKMSDFEEASKKVQPSLRREGFSIIPNIKWDDVGGLDLLRKEFERYIVRRIKYPEDYEGLGVDLETGFLLYGPPGCGKTLIAKAVASEAGASFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCILFFDEVDALTTKRGKEGGWVIERLLNQLLIELDGAGHRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDERVLILKALSRTKAIDATVDLSAIARMEGCENLSGADLAALMNEAAMAAVEERCKTINSNHFEVALSKVSPSVSDRQKQYYQHLSESFKAA* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00907 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 778 IPR027417 -
Lapu1g00907 783 FunFam ATPase, AAA family protein 516 695 - -
Lapu1g00907 783 Pfam AAA+ lid domain 711 755 IPR041569 -
Lapu1g00907 783 Pfam AAA+ lid domain 424 459 IPR041569 -
Lapu1g00907 783 MobiDBLite consensus disorder prediction 114 130 - -
Lapu1g00907 783 ProSitePatterns AAA-protein family signature. 371 389 IPR003960 GO:0005524|GO:0016887
Lapu1g00907 783 Gene3D - 689 759 - -
Lapu1g00907 783 FunFam Ribosome biogenesis ATPase RIX7 211 400 - -
Lapu1g00907 783 Gene3D - 402 510 - -
Lapu1g00907 783 MobiDBLite consensus disorder prediction 62 142 - -
Lapu1g00907 783 Gene3D - 209 400 IPR027417 -
Lapu1g00907 783 Gene3D - 516 773 IPR027417 -
Lapu1g00907 783 FunFam Cell division control protein 48 homolog C 402 510 - -
Lapu1g00907 783 MobiDBLite consensus disorder prediction 69 112 - -
Lapu1g00907 783 PANTHER AAA-FAMILY ATPASE 107 781 - -
Lapu1g00907 783 Pfam ATPase family associated with various cellular activities (AAA) 559 687 IPR003959 GO:0005524|GO:0016887
Lapu1g00907 783 Pfam ATPase family associated with various cellular activities (AAA) 261 399 IPR003959 GO:0005524|GO:0016887
Lapu1g00907 783 SMART AAA_5 257 403 IPR003593 GO:0016887
Lapu1g00907 783 SMART AAA_5 554 690 IPR003593 GO:0016887
Lapu1g00907 783 MobiDBLite consensus disorder prediction 201 221 - -
Lapu1g00907 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 511 IPR027417 -
Lapu1g00907 783 ProSitePatterns AAA-protein family signature. 658 676 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00907 Lapu-Chr1 22507478 22512239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00907 489 781 Calmodulin-binding Proteins AT3G56690 43.098 4.94e-67 238