Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00891 ATGTCTCTAACAGGCCGTTCTCGTATCGTTGTGAATGGAGTTAGAAGAACAAGATCTTTTCACTATTTTTGGTGCCTATATTGCCAAAGAACCGTGAGGATACCCTTTACAAACAATGATGGTTCTATATGCCCCTATTGCTTCTACCAACTGCGCTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGGAACCTTCACCAGCTACTCAACTTTTGCATAACTTGGCCCTCGTTCTTGATCCACCTCTAAGGAGGCAAAACAACAACCATTTGAACACAACCACACAATGGGAAACAGAAAATGAAGACGGTTCAGATCCTCAGGCTTGGATTACACTCCGATTTCCAAGGCCAACTCGTGCACCTAGGCCTATTTCCCCACCACAAAACTTGGTTACTCACACCAATGACACTGAGACCCTTTTTGAGAACACAATATTAGATGACTTCATTGATGGGGTGATTCAGAACAATAATAGACCAGGGCCACCTCCAGCAACATCTTCTGCCATTGCAGCATTGCCAATGGTGAAACTGACACATGCGCATTTGGCAAGTGACCCCAATTGCCCAATTTGCAAAGATGAGTTTGAGATTGACATGGAAGCCAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCTGTGTGCCGTTATGAGCTACAAGGTGTTGTTACTCCTAATATTACTAATTACCGTTTTCAAAGTGATGAGAATGACCTGAGGTTTGCGTTTGAGGATGTCACAAACAGCTTGAATTGGATTTGGAACCACTTGGCTTCAGTCTGGCCTATCCGTTCAATCCTAGATTGGACACGGTCCTACTTTGATTTCCAAGAAAATCGTGTTCGTGGTCGTAGAGGTAGTTCTTGGTGGCGATCATTGCTCGTTATATAG 957 0.4441 MSLTGRSRIVVNGVRRTRSFHYFWCLYCQRTVRIPFTNNDGSICPYCFYQLRYELDISRPRLLMNVPNNLEPSPATQLLHNLALVLDPPLRRQNNNHLNTTTQWETENEDGSDPQAWITLRFPRPTRAPRPISPPQNLVTHTNDTETLFENTILDDFIDGVIQNNNRPGPPPATSSAIAALPMVKLTHAHLASDPNCPICKDEFEIDMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELQGVVTPNITNYRFQSDENDLRFAFEDVTNSLNWIWNHLASVWPIRSILDWTRSYFDFQENRVRGRRGSSWWRSLLVI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00891 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 244 IPR013083 -
Lapu1g00891 318 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Lapu1g00891 318 Pfam Ring finger domain 196 238 IPR001841 -
Lapu1g00891 318 CDD RING-H2_RNF126-like 196 238 - -
Lapu1g00891 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 241 - -
Lapu1g00891 318 FunFam E3 ubiquitin-protein ligase RING1-like 161 244 - -
Lapu1g00891 318 SMART ring_2 197 237 IPR001841 -
Lapu1g00891 318 SUPERFAMILY RING/U-box 178 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00891 Lapu-Chr1 22399506 22403991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00891 1 299 C3H Transcription Factor Family AT1G68180 31.457 1.39e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00891 K11982 - gmx:100793656 499.204