Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00879 ATGGTGAAGAAAGGTCCATGTTCGCATTGCAGAATTAATTCTACACCACTTTGGCGTAATGGACCAGCTGAGAAACCTGTGTTGTGCAACGCTTGTGGATCACGATACAAGTTGAAAGGGCACCTTGACAATTATCTCCCCAAACACCACAAGAACCATAGTGAAAATCATCTCAACGTTGAGGACCAACTTTCAGACCATGCTCATAATGAAAACAGTAATGAGTCAAGCCCAGATTTCCTTTATATATCAGAGCAAGATTTTGGGAACAGCGTCCCCACGAGGAAACGGTCACGGGTGGTGTACAGGCAGATGACACCATTGGAGAAGTTTCACAAGCAGCTTCTGAGTTTGTATAGAAGTGAAAAGCAACCAAATGAGCCATCTCCAGAAGAGGATATATTGGTGGATAACGTCAACAACTTCATACCCAGCAATGAGATAGGAGTTGGAGTCGTTATTCTTAAGATAGATACCGGATCATGGACATGCTTCTCCTCAACAGATGACCAAGCGCATCCTTAA 525 0.4362 MVKKGPCSHCRINSTPLWRNGPAEKPVLCNACGSRYKLKGHLDNYLPKHHKNHSENHLNVEDQLSDHAHNENSNESSPDFLYISEQDFGNSVPTRKRSRVVYRQMTPLEKFHKQLLSLYRSEKQPNEPSPEEDILVDNVNNFIPSNEIGVGVVILKIDTGSWTCFSSTDDQAHP* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00879 174 CDD ZnF_GATA 6 41 IPR000679 GO:0006355|GO:0043565
Lapu1g00879 174 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lapu1g00879 174 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lapu1g00879 174 Gene3D - 2 71 IPR013088 GO:0006355|GO:0008270
Lapu1g00879 174 SMART GATA_3 1 56 IPR000679 GO:0006355|GO:0043565
Lapu1g00879 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 46 - -
Lapu1g00879 174 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lapu1g00879 174 PANTHER OSJNBB0038F03.10 PROTEIN 7 157 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00879 Lapu-Chr1 22300742 22303310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00879 1 67 C2C2-Gata Transcription Factor Family AT5G47140 56.716 5.76e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu1g00879 GATA 7.9e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00879 - - var:108341731 239.195