Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00872 ATGGAAGGTCACCGGAAGCGGTTGAAGCCGCGCCTTGAGCGGCGGAACGCCATGAAAAACATCGATTACCGGTCAAAGGAGGATGAAGACACAGACACGGACATAGACATAGACATAGGTAGTTTGAATCAAAGGAGTTTCCGAGTGGAAGGAACCGACGGCGAATTCGACCGTATCTTTCGGAGCTTGGGCCTGTCTGGGCCCGAGGACTTTGCCATCCCAGCTGCGGCTTGGAAAGAAGCCCAGGACCAAAAGGCCCGCAGCGCCGTCAACCTCCAACTCGAACCGTCACAAAATAAAAAACAGAAAGAGGGGGCAATAAAGGGCGTTAGGCCTCCCGTTTTGGAACCGCCGCAGGTTACCTCTACTTGGACCTCCCAACAACCAACGGAGAGGGACCCACTTTCTGATTCCGTGTCACGTGATGATAATAGTGACGTTGGTGTTGAAGCTGAAATTGAAGAGGTTTCTGCTTTGGTTGAGAACGAGTCCATTGATGTTCATAATCTGTCGCCGAATGTGAAGGGATATTTCAGGTCGTGGCAAAAGGGCGAAATCTTGGGAAAGGGCTCTTTTGGGACTGTTTATGAAGGATTCACCGATGATGGGAACTTTTATGCTGTTAAGGAGGTGTCTTTACTGGATGACGGTAGCCAGGGCAAACAGAGCATTTTCCAGCTTCAGCAGGAAATCTCTCTCTTGAGTCAGTTCCGACACGACAACATAGTTCGATATTTTGGCACTGACAAGGATAATGATAAGCTGTATATCTTCCTTGAACTTGTCACAAAAGGATCATTGGCAAGTCTCTATCAAAAGTATCGATTAAGGGACTCTCAAGTTTCTGCATACACAAGACAGATTTTGAGTGGCTTGAAATATCTTCATGATCGTAATGTGGTTCACAGGGACATCAAGTGTGCCAATATATTGGTTGATGCAAATGGGTCCGTCAAGCTTGCAGATTTTGGATTGGCCAAGGCAACCAAGTTGAATGATGTTAAATCAAGTAAAGGCTCCCCGTACTGGATGGCCCCCGAGGTTGTTAACTTGAGGAACCGTGGATATGGGCTAGCAGCCGATATATGGAGCTTAGGATGCACTGTATTAGAAATGTTGACACGACAACCTCCTTACTCTCATTTGGAAGGAATGCAAGCGATATTTCGAATTGGCAGTGGTCAACCTCCACCTGTTCCGGAATCTTTGTCAATAGATGCCCGAGATTTCATCCTTAAATGCTTACAAGTTAACCCAAACAAACGGCCAACTGCTGCTCGGCTATTGGACCATCCCTTTGTAAAGAGACCATTTCTATCTCCCATAAGTCCTGTTTCTCCAAGTATTAATCTTTTACTGTCTTGA 1365 0.4652 MEGHRKRLKPRLERRNAMKNIDYRSKEDEDTDTDIDIDIGSLNQRSFRVEGTDGEFDRIFRSLGLSGPEDFAIPAAAWKEAQDQKARSAVNLQLEPSQNKKQKEGAIKGVRPPVLEPPQVTSTWTSQQPTERDPLSDSVSRDDNSDVGVEAEIEEVSALVENESIDVHNLSPNVKGYFRSWQKGEILGKGSFGTVYEGFTDDGNFYAVKEVSLLDDGSQGKQSIFQLQQEISLLSQFRHDNIVRYFGTDKDNDKLYIFLELVTKGSLASLYQKYRLRDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQAIFRIGSGQPPPVPESLSIDARDFILKCLQVNPNKRPTAARLLDHPFVKRPFLSPISPVSPSINLLLS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00872 454 Pfam Protein kinase domain 182 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00872 454 SMART serkin_6 181 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00872 454 ProSiteProfiles Protein kinase domain profile. 181 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00872 454 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 83 437 - -
Lapu1g00872 454 MobiDBLite consensus disorder prediction 118 134 - -
Lapu1g00872 454 MobiDBLite consensus disorder prediction 1 34 - -
Lapu1g00872 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Lapu1g00872 454 FunFam Mitogen-activated protein kinase 1, putative, expressed 179 447 - -
Lapu1g00872 454 MobiDBLite consensus disorder prediction 91 147 - -
Lapu1g00872 454 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Lapu1g00872 454 MobiDBLite consensus disorder prediction 14 30 - -
Lapu1g00872 454 Gene3D Transferase(Phosphotransferase) domain 1 179 444 - -
Lapu1g00872 454 SUPERFAMILY Protein kinase-like (PK-like) 179 445 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00872 Lapu-Chr1 22252062 22255542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00872 3 91 MAP Kinase Kinase Kinase AT4G08500 39.000 1.75e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu1g00872 Pkinase 3.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00872 - K13414 var:108347588 802.742