Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00849 ATGGCTTCGTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGAGCCCAGTCTGGCCGTGGGCCAAGCGGGGCTCTTAATGGTGGAAGAATGGCTGGTGCTGTTAATAGTAGAAGAATGAATGGTGCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCATATGCTATTGCCAAGGCAAGCTCAAAAATCGTGGATTCTATTCGCAGAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTGACCAATGAAGATATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTTTGGATGGCAAGCCCATGAAGATTGAGATTGTCGGTTCCAATGCGGAATTGCCTGTAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGCCGTCGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGGCAAGCTGGAGGTCCTGCTATTCACAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGTGCAAGGGGTGGCACAAGGAGTGGCAATGGTAGGGGTCGTGGTGGTCGTGGTCGTGGCCGTGGCAATGGTCGTGGTGGAGGTCGAGGCCGTGGTAGAAAGGACACTATTGAGAAGTCTGCAGAGGAACTTGACAAAGAACTGGAGACCTATCATGCTGAGGCCATGAACATCTCCTGA 924 0.4848 MASSLDMSLDDRIKNRSNRGGRGRGGRGRAQSGRGPSGALNGGRMAGAVNSRRMNGAGNGGRTSGAVRRGPLMVNTRPSSYAIAKASSKIVDSIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPVSARVNVTGVNGRRKRTVVMTPRGGQAGGPAIHNRGAGWGRRGGARGGTRSGNGRGRGGRGRGRGNGRGGGRGRGRKDTIEKSAEELDKELETYHAEAMNIS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00849 307 Gene3D - 118 199 IPR012677 -
Lapu1g00849 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Lapu1g00849 307 SUPERFAMILY RNA-binding domain, RBD 117 197 IPR035979 GO:0003676
Lapu1g00849 307 Coils Coil 282 307 - -
Lapu1g00849 307 SMART FoP_duplication_2 233 307 IPR025715 -
Lapu1g00849 307 Pfam C-terminal duplication domain of Friend of PRMT1 246 301 IPR025715 -
Lapu1g00849 307 CDD RRM_THOC4 123 197 - -
Lapu1g00849 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Lapu1g00849 307 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 304 - -
Lapu1g00849 307 MobiDBLite consensus disorder prediction 225 288 - -
Lapu1g00849 307 SMART rrm1_1 124 196 IPR000504 GO:0003723
Lapu1g00849 307 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00849 Lapu-Chr1 21982435 21988286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00849 122 197 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.78e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00849 K12881 - gmx:100801491 444.891