Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00848 ATGGCAACTGAAGACTTCATTAATAAACCCCTTTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCAATTGAGGCACTGAATGAAGGGAATGGTTCGAATAAAACGTCAATCTCGAAGTACATAGAATCTAGGTACGGTGTATTGCCTCCGGGCCACAAGGTACTGCTGAATGTGCACCTTGCAAAAATGAGGGACAGTGGGGTGCTAGACTTTTGGAAGAATAACTACACCAAACGTGACCCAAACGCGCCGCCGCGGCGTGGCCGTGGCAGACCACCCAAGCCCAAGGAGCCTCTGCCTCCGGGCACTGTCTTGTCACCGCCCAGGCCAAGGGGTCGCCCCCCAAAGGGCCCAAGTGCCACGCCAAGGCCACCCAAAGCCTCTGCTGGGAGTGGCAGGCCCAGAGGCCGGCCCAGGAAGATGGCCCGGCCCGCTGGAGGATTTGGCGAAGCATCGCCTTCCCCGTTGAAGCCCAGAGGGAGGCCTCCGAAAGCGAAGCCTGAATTAGTAGAAAATATTGCTTAG 528 0.5625 MATEDFINKPLSLPPYPEMILEAIEALNEGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDSGVLDFWKNNYTKRDPNAPPRRGRGRPPKPKEPLPPGTVLSPPRPRGRPPKGPSATPRPPKASAGSGRPRGRPRKMARPAGGFGEASPSPLKPRGRPPKAKPELVENIA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00848 175 MobiDBLite consensus disorder prediction 81 95 - -
Lapu1g00848 175 PRINTS High mobility group protein (HMGY) signature 122 141 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lapu1g00848 175 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lapu1g00848 175 PRINTS High mobility group protein (HMGY) signature 109 120 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lapu1g00848 175 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Lapu1g00848 175 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Lapu1g00848 175 SMART AT_hook_2 157 169 IPR017956 GO:0003677
Lapu1g00848 175 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Lapu1g00848 175 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu1g00848 175 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu1g00848 175 FunFam HMG-Y-related protein A 8 90 - -
Lapu1g00848 175 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu1g00848 175 MobiDBLite consensus disorder prediction 72 175 - -
Lapu1g00848 175 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Lapu1g00848 175 Gene3D - 9 84 IPR036388 -
Lapu1g00848 175 MobiDBLite consensus disorder prediction 96 123 - -
Lapu1g00848 175 PANTHER HISTONE H1 12 168 - -
Lapu1g00848 175 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Lapu1g00848 175 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Lapu1g00848 175 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00848 Lapu-Chr1 21976006 21977848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00848 19 91 Single Myb Histone (SMH) Gene Family AT1G49950 41.026 4.20e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00848 - - gmx:100803968 248.44