Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00836 ATGGCACTGGCCAAAGACCAAAAAATTCCACATGATTCAAGCATGAGCAGCAAGGTTCCAAACTGTGCTTTCAGTGAGGCTGTGGAGACTACCTCCGTGACTGTTCATAGAGTCAATGAGTACCACAAATCAGTGTTAGAAGAGGAAGATGGCTCACAAACTACCAATGGTCTCAGCAATGATTCAGGTATAAAACATTCCCCTCCTCTGTCCGGCAGTGGCAAAGGGTATACTTATAAGGACACAAACTACCAGCTTGATGAAGAAGAATCACTGATTAATTTCAAAGGGTACAGCAATCTCATACAAGCTGGTGAATCTTTGCTTAGCTTTCAGCACAACATTCTGGTCCCTAACAACTGTTACTTGAAAGATAATAATCAGAAAGAGTACTGTGTTTGGGAGAATAATTTGCATCAAGGCCATAACAACTGGAATCAGACTAGTCCAAGAAGCACTAAGGACATGCGCCTGGTGCAGGATTTCAGTTGCTTTCAAACTGCTAGTGGCTATAGCTCCATAGTCGATAATGCAAAAGAGAAGCAATATGGCCAAAGTTCATGGCTCTACTCAGCACCAACTATCCGTAATGATAGGAGCCTCCACAAGTTAGGGGCACGAGAGACGGTGTTGCAAAAGCGCCCTTCAATGGGAGAGAGCACGAAAGCTGCCAAGAAGCAATGCTCAACTGGGAGCAAGACGCCAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCAGCCAAGAATCGAAGAGAGAGGATAAGCGAACGATTGAAGATACTACAAGAACTAGTGCCTAATGGCTCCAAGGTTGATATGGTTACTATGCTGGAGAAAGCAATTAGCTATGTAAAGTTTCTTCAACTTCAAGTGAAGGTGTTAGCAACTGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTGAAGGAAGTCATCGATGCCATTCGTTCATCACAAATAGAGAGAAGTTTAAACTCAAAGTAG 1008 0.4355 MALAKDQKIPHDSSMSSKVPNCAFSEAVETTSVTVHRVNEYHKSVLEEEDGSQTTNGLSNDSGIKHSPPLSGSGKGYTYKDTNYQLDEEESLINFKGYSNLIQAGESLLSFQHNILVPNNCYLKDNNQKEYCVWENNLHQGHNNWNQTSPRSTKDMRLVQDFSCFQTASGYSSIVDNAKEKQYGQSSWLYSAPTIRNDRSLHKLGARETVLQKRPSMGESTKAAKKQCSTGSKTPKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDAIRSSQIERSLNSK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00836 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 290 IPR011598 GO:0046983
Lapu1g00836 335 MobiDBLite consensus disorder prediction 44 78 - -
Lapu1g00836 335 FunFam Transcription factor bHLH83 239 298 - -
Lapu1g00836 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 302 IPR036638 GO:0046983
Lapu1g00836 335 SMART finulus 247 296 IPR011598 GO:0046983
Lapu1g00836 335 MobiDBLite consensus disorder prediction 209 254 - -
Lapu1g00836 335 Pfam Helix-loop-helix DNA-binding domain 251 291 IPR011598 GO:0046983
Lapu1g00836 335 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 119 299 IPR045843 GO:0003700|GO:0006355
Lapu1g00836 335 MobiDBLite consensus disorder prediction 222 247 - -
Lapu1g00836 335 MobiDBLite consensus disorder prediction 50 67 - -
Lapu1g00836 335 Gene3D - 236 298 IPR036638 GO:0046983
Lapu1g00836 335 CDD bHLH_AtIND_like 242 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00836 Lapu-Chr1 21860687 21862296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00836 75 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.349 2.88e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g00836 HLH 7.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00836 - - gmx:100810010 536.569