Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00835 ATGGAGAGTCCCCATTCGCTCTCTCCCTCCTCCTCTTATTCCTCCGACGGCGTCACTTTCGACACGGAGGAGCCGCGGACGCCGCTCGCCGTGCGCCGCGCGCTGCACCTTATCAACTCCGGCGAGCCCCACCTCTGCCTCCAAGCCGCTCGTGACATCCGCCGACTCACCAAGACGTCCCAACGATGTCGGCGCCAACTGTCTCAGGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAAGCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCAATAGTTTGTTTCCTCAAGTCTCAAAATCTAAATCTGCAGGAGTCTGCAACTGCGTCATTGCTCACACTATCTGCCTCTTCGACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTAGAGATCCTTAAAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCTACTAATCTCAGCACCATTCTTGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAAACCTGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGATTATGATGAGGGCAGAACTGCCTTGACATCTGAGGAAGGCGGGGTTCTGGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCTCTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTCATTCCAGGACTTCTCGAGCTTACTGTTCAAGGGACACCTAAGTCTCAGTTAAAAGCTCGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTGGAGAATATAGTATGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTGGCTGAGATGGTTCAAGTAAGCATGGAACAAAGTCTTAGACATTTACAACAAAGGGCTCTCGTGTGCACCCCAAGTGATCTTCCTATAGCTGGCTGTGCTGGCTGTGCTTCTGAGGTTTCTTCAAAATGA 1167 0.4893 MESPHSLSPSSSYSSDGVTFDTEEPRTPLAVRRALHLINSGEPHLCLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESHEAALLALLNLAVKDEKNKINIVEAGALEPIVCFLKSQNLNLQESATASLLTLSASSTNKPIISACGAIPLLVEILKDGSPQAKADAVMALSNLSTHPTNLSTILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQLKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCAGCASEVSSK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00835 388 MobiDBLite consensus disorder prediction 1 21 - -
Lapu1g00835 388 Gene3D - 18 369 IPR011989 -
Lapu1g00835 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Lapu1g00835 388 MobiDBLite consensus disorder prediction 1 22 - -
Lapu1g00835 388 Pfam Armadillo/beta-catenin-like repeat 144 180 IPR000225 GO:0005515
Lapu1g00835 388 Pfam Armadillo/beta-catenin-like repeat 101 138 IPR000225 GO:0005515
Lapu1g00835 388 PANTHER U BOX DOMAIN-CONTAINING 30 313 - -
Lapu1g00835 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
Lapu1g00835 388 SMART arm_5 59 98 IPR000225 GO:0005515
Lapu1g00835 388 SMART arm_5 100 140 IPR000225 GO:0005515
Lapu1g00835 388 SMART arm_5 141 181 IPR000225 GO:0005515
Lapu1g00835 388 SMART arm_5 182 224 IPR000225 GO:0005515
Lapu1g00835 388 SMART arm_5 226 266 IPR000225 GO:0005515
Lapu1g00835 388 SUPERFAMILY ARM repeat 34 332 IPR016024 -
Lapu1g00835 388 FunFam U-box domain-containing protein 4 15 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00835 Lapu-Chr1 21842198 21846388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00835 48 308 U-box Gene Family AT2G23140 34.601 2.66e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00835 - - gmx:100780954 640.573