Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00829 ATGGGTTGCTGCTTTAGTGCTCCTCCAAAGATCAAAGCCGAGAGCCCTCCACGTAATGGTTTGAACTCAAAGGATGATAGCAAACAAGAGAATGATTTAAGTGGTTTAAGCGGCAAGGTGTCCTCTTCGTCTATGCTTCTAACTCCCCAGAATGAGGTTGAGATATTAGAAGCCAGCAATTTGAAGAATTTCGCATTCAATGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAGATAGTATGGTAGGCGAAGGTGGGTTTGGTAGTGTGTTTAAAGGGTGGATTGATGAGCAGACACTTGCCCCTACTAAAGCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGACACACTGAATGGTTGACTGAAATCAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAGCTAATTGGTTACTCCTTGGAGGATGATCATCGGATTTTGGTGTATGAATTTGTGGCCAAGGGTAGCTTGGATAATCACTTGTTCAGGAGGGCTTCTTACTTTCAACCACTCTCTTGGAACATCCGTATGAAGATTGCTCTTGATGCTGCCAAGGGCCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATACAGGGACTTCAAAACTTCTAATATCTTACTTGATTCTAATTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAAACGGACCAGAAGGTGATAAGAGCCATGTTTCTACAAGGGTGATGGGCACCTTTGGCTACGCAGCTCCTGAGTATATTGCCACAGGTCACCTAACCAAAAGGAGTGATATATACAGTTTTGGAGTTGTTCTGCTGGAACTTATGTCAGGAAAACGTGCACTGGACAACAACAGGCCAAGTGGGGAGCATAATTTAGTTGAATGGGCCAAACCACTACTCATAAACAAACACAAGATCTCCCAAGTCATGGATGCACGTATAGAAGGCCAATACTCTAAGCGAGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATGCTTATCTACAGAACAAAAAGTCAGACCAAACATGGACGATGTGGTGAGATCATTGGAACATCTTCAGGATTCCAATGACACAGAAATAAATGGTCATAGCTCAAGCAGCAGTGGTACTCCTATTCGTAGTTTGTCTCCTTCTCCTCTTCGTACATAG 1176 0.4311 MGCCFSAPPKIKAESPPRNGLNSKDDSKQENDLSGLSGKVSSSSMLLTPQNEVEILEASNLKNFAFNELKTATRNFRPDSMVGEGGFGSVFKGWIDEQTLAPTKAGTGMVIAVKRLNQESNQGHTEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYFQPLSWNIRMKIALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKRSDIYSFGVVLLELMSGKRALDNNRPSGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKREAKRIAHLAIQCLSTEQKVRPNMDDVVRSLEHLQDSNDTEINGHSSSSSGTPIRSLSPSPLRT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00829 391 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Lapu1g00829 391 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Lapu1g00829 391 Gene3D Transferase(Phosphotransferase) domain 1 162 378 - -
Lapu1g00829 391 MobiDBLite consensus disorder prediction 1 43 - -
Lapu1g00829 391 PANTHER OS01G0588500 PROTEIN-RELATED 39 362 - -
Lapu1g00829 391 MobiDBLite consensus disorder prediction 367 391 - -
Lapu1g00829 391 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Lapu1g00829 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lapu1g00829 391 FunFam Probable serine/threonine-protein kinase PBL8 162 377 - -
Lapu1g00829 391 SUPERFAMILY Protein kinase-like (PK-like) 61 360 IPR011009 -
Lapu1g00829 391 FunFam Serine/threonine-protein kinase BIK1 42 161 - -
Lapu1g00829 391 CDD STKc_IRAK 82 361 - -
Lapu1g00829 391 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00829 391 MobiDBLite consensus disorder prediction 360 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00829 Lapu-Chr1 21782198 21785704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00829 62 370 Glycoside Hydrolase AT3G07070 48.553 4.25e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu1g00829 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00829 - - var:108326804 737.643