Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00828 ATGGCAATTGGGTTGATGGAAGTGCAGCTTCTGAAAGCAAAGGACTTGTGTGACACTGATATCTTCGGTGGTATGGACCCCTATGTTGTGATACAATACAACGGCCAAGAGCAAAGGAGTAGTGTTGCTAAGGGAGAAGGCAATAATCCTGTGTGGAATGAGAAATTTGTGTTCAAGGCAGAATATCCTACACCAAATAACTCATACAAGATCATCTTGAAAATCATGGACAAGGACCTTTTATCTGCAGATGACTTCGTTGGTCAAACCACAGTTCATGTGAAAGATTTATTAGCCATAGGGGTGGAGGATGGTGCAGCTGAGCTACAACCTCTCAAGTATAGAATAATTGGTGCAGACCAATCTTATTGTGGAGAAATTGATGTTGCTATATCTTTTCAGGTGGAAGAAGAGTTGGCTGGAGAATGA 429 0.4172 MAIGLMEVQLLKAKDLCDTDIFGGMDPYVVIQYNGQEQRSSVAKGEGNNPVWNEKFVFKAEYPTPNNSYKIILKIMDKDLLSADDFVGQTTVHVKDLLAIGVEDGAAELQPLKYRIIGADQSYCGEIDVAISFQVEEELAGE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00828 142 Pfam C2 domain 5 103 IPR000008 -
Lapu1g00828 142 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Lapu1g00828 142 PANTHER C2 DOMAIN-CONTAINING 3 134 - -
Lapu1g00828 142 SMART C2_3c 5 106 IPR000008 -
Lapu1g00828 142 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 133 IPR035892 -
Lapu1g00828 142 Gene3D C2 domain 2 135 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00828 Lapu-Chr1 21776901 21780008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00828 3 109 C2H2 Transcription Factor Family AT4G21160 31.776 6.53e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00828 - - gmx:100526962 249.21