Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00818 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGAATTATACCGGAGAGACGAGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTTTGTTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGTTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCCGCAGCCAGTGGCATTCTTGGCCACACGGAACTGAGGTTGCATATGCCGCCATCAATAGCACTTGCTAGTCGAGGACGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGACCGAGAGTTTGATGACCTTGATTATGAAACTTTAAGAGCTTTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACCGAGGAAGAGATAAATGCTCTTCCGGTCCACAAATATAAGGTCGCTGGTCCCCAGAGTGGTGGTTCATCAATGCAACAAGCATCGTCTTCCACTTCTGCTGAGAAGAAGCAAGATAATTCAGGTGCTGTTGGGAGCATGAAAGTCTCTGACGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGAAGTACTGCGTAGCTTACCATGCTTACATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAACGATATCGCGGACATGGTTTGA 822 0.4586 MSFVFRGTRADIENGFPGIIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSMQQASSSTSAEKKQDNSGAVGSMKVSDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00818 273 Pfam Ring finger domain 212 254 IPR001841 -
Lapu1g00818 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Lapu1g00818 273 SMART ring_2 213 253 IPR001841 -
Lapu1g00818 273 MobiDBLite consensus disorder prediction 176 202 - -
Lapu1g00818 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 259 IPR013083 -
Lapu1g00818 273 SUPERFAMILY RING/U-box 208 257 - -
Lapu1g00818 273 CDD RING-H2_PA-TM-RING 212 254 - -
Lapu1g00818 273 MobiDBLite consensus disorder prediction 173 203 - -
Lapu1g00818 273 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00818 Lapu-Chr1 21605363 21610274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00818 1 273 C3H Transcription Factor Family AT3G55530 77.899 1.98e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00818 K16283 - gmx:100777936 462.996