Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00816 ATGATGTCTTCTGGGACATCCTCGTATTGGTGCTACCGGTGCAGCCGCTTCGTCCGTGTTTTCCGTCAGGACACCGTAGCCTGCCCCGACTGCGACGGAGGATTCATCGAAGAAATCGAACACCCACCGCGCTCAGTCCACCTCGACCCTCGCCGCCGCCGCTTCCCCGCCGCTGCCATGTACATGATCGGCCAACGCCCTGGCTCCGATAACGCTGCCCGCCCTGCCCTACGCCGCACCCGCCGCAACGGTGGTGACCGCTCCCCCTTCAACCCTGTTATCGTCCTCCGCGGCAGCACAGCTGCCACCTCTGCTACCACTTCCGCTACCACCGAAGATGAAAGTCGAGGCTTTGAACTCTTCTACGACGATGGTGCCGGTTCTGGCCTGAGACCTTTGCCTCCAAGCATGTCAGAGTTTCTTCTCGGATCTGGATTCGATAGACTCTTGGAACAACTCTCTCAGATTGAGATCAATGGTATTGGAAGGTATGAGCACCCTCCTGCATCAAAAGCAGCCATTGACTCGTTACCAACCATCGAAATTGATGATACTCACTTAGCCATGGAATCACACTGTGCCGTGTGCAAGGAAGCTTTTGAATTAGGCACAGCTGTGAGGGAAATGCCTTGTAAGCATATATATCACCCTGAATGCATTCTACCATGGCTCGCACTTCACAATTCTTGCCCTGTTTGTCGTCACGAGTTGCCTGTGGATTCCCCGAACGCAAATTCAAATCCACCACAAAATGTGGGTTTGAACGAGGAAGAGAATGTGGGGTTGACAATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTAGGAAGATTCTCAGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTGTATACTGAAATGGATGGGGGGTTTAACAATGGAGGTGAGCCTAGGAGGATTTTATGGTCATCTAGAGGGAATAGAGGGAGAGAAAGTGGGGGTTTGAACCGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGTGTTGGCAGTAGTGGTAGTAGTACTACACCTAGTTCTGCTTCTAGGAGAGAGTCTATGAGGGTGAGTTCCTCTCGTTCTAGTATGGATCCTTCTCCGCGGTCACGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCGTGGTAG 1161 0.528 MMSSGTSSYWCYRCSRFVRVFRQDTVACPDCDGGFIEEIEHPPRSVHLDPRRRRFPAAAMYMIGQRPGSDNAARPALRRTRRNGGDRSPFNPVIVLRGSTAATSATTSATTEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPVDSPNANSNPPQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRILWSSRGNRGRESGGLNRFFRNLFGCFRGGVGSSGSSTTPSSASRRESMRVSSSRSSMDPSPRSRRTWSMDVNSGMRAW* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00816 386 SUPERFAMILY RING/U-box 173 242 - -
Lapu1g00816 386 CDD RING-H2_RNF126-like 193 234 - -
Lapu1g00816 386 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Lapu1g00816 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 240 IPR013083 -
Lapu1g00816 386 MobiDBLite consensus disorder prediction 338 378 - -
Lapu1g00816 386 FunFam E3 ubiquitin-protein ligase RING1-like 155 240 - -
Lapu1g00816 386 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Lapu1g00816 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 238 - -
Lapu1g00816 386 SMART ring_2 193 233 IPR001841 -
Lapu1g00816 386 Pfam Ring finger domain 192 234 IPR001841 -
Lapu1g00816 386 MobiDBLite consensus disorder prediction 338 386 - -
Lapu1g00816 386 Pfam Protein of unknown function (DUF1117) 260 365 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00816 Lapu-Chr1 21587549 21590122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00816 132 243 C3H Transcription Factor Family AT5G01980 41.071 3.70e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00816 K11982 - gmx:100807324 644.425