Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00806 ATGGAGGAGTCTCAGTACTTGTTGTGGTTCAAGAGAAAACAAATCTTGAACTCACATATTCAACAACCATTTGGAGTCCGCAATAACAACACCAACTCATCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCGTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAACGTGCACAGGAGGGACAGGGCTAGACTCAAACAAAGCCTTAGTCACCATAATGAATCCCTTCAACATGTTCACAAAAATGATTGTTCAGTTGCAACAAGCAAAGTCTCATCTTCTAGGCCCTCAACTATATCCACTCAAGAAATTTGTTATCATCAGCCTACCATGTCTCCTCACTCTTCTTCAATTAGCTGGGGACATCACCACATGGGGTCTCCTGATTCAGAGCCAAAAGGGTCTGCAGTGAATGGAAGGGAACAGTTTTTAAAAGATCTGGGCTGCAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAGTTACCAATTGAATCATATGGGGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCACAAGCCATGTTCAAGTGATAGACACCTAACTTTTCATTCTGCAGAATTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTCTTTAG 774 0.4289 MEESQYLLWFKRKQILNSHIQQPFGVRNNNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHNESLQHVHKNDCSVATSKVSSSRPSTISTQEICYHQPTMSPHSSSISWGHHHMGSPDSEPKGSAVNGREQFLKDLGCNDYVETSLSVGQSSVFGQKLPIESYGDEAISYKRSKTSMPPLPVFHKPCSSDRHLTFHSAEFVLGLKPGMEDLDLELRLGKPQKVL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00806 257 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lapu1g00806 257 Pfam C2H2-type zinc finger 58 82 - -
Lapu1g00806 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Lapu1g00806 257 MobiDBLite consensus disorder prediction 138 159 - -
Lapu1g00806 257 SMART c2h2final6 58 80 IPR013087 -
Lapu1g00806 257 Gene3D Classic Zinc Finger 55 119 - -
Lapu1g00806 257 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Lapu1g00806 257 PANTHER OS07G0101800 PROTEIN 29 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00806 Lapu-Chr1 21513308 21514191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00806 20 127 C2H2 Transcription Factor Family AT2G37740 44.355 3.59e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g00806 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00806 - - gmx:102663477 449.514