Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00788 ATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAATAGAGGAAGGGGTGGTGGTCGTCATCTACAACAACCTGAAGAGGAAAACATGGCTTGGTCAGCTCCAGCTAGATCACGGGATGAGCGTGCTAGATCGCGGAAAGAGAAAGAAGATCTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACGGGGTATAGATGGCGAACAGGAGCAAGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCTCATCCTCCATATGCCCCTGTACCAGCTTATCCCCATGGATATGGTATGACATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATCTATGGCGATTGTTTAGGAGTCGGTCATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGTATCCATATCACAAGTCCTGTTTTAAAGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAATATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGGATGAAAGATACTGTAGATTAGAAGATGGAAGGATTTTGTGCATTGAGTGCATGGAATCTGCTATAAACGACACCGGTGAATGTCAGCCTCTTTATCATGGTATCAGAGACTATTACGAAGGAATGAATATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCTATTGTTGGAGAGAAGAATGGTTTCCATCACCTACCAGAAACTAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACCAGCGTGCAAAGACGGCCAAGAATTGGAGGTCATAGATTAATGGGGATGAGATCTCAACCTCAAAAGCTGCTTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCACGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCATAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTCTCTTACATGTGGCTTGAGACAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCTTCCTCCTCCACCCACTCATCAAAGAAAGGTGCAAAATCTCATGTTGAACGTAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAAGCTGTGAATAAATATGGTTTACGTTCCACTCTGGACCATATTCGTTTTACTGGTAATTTCCCAATGTAA 1443 0.429 MKWFGKIFKIGSNRGRGGGRHLQQPEEENMAWSAPARSRDERARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARTDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGMTSHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKYPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRDERYCRLEDGRILCIECMESAINDTGECQPLYHGIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLMGMRSQPQKLLRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLETEVMSCARTMPSTSSASSSSSSTHSSKKGAKSHVERKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRSTLDHIRFTGNFPM* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00788 480 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 141 - -
Lapu1g00788 480 MobiDBLite consensus disorder prediction 405 425 - -
Lapu1g00788 480 CDD LIM_DA1 117 168 - -
Lapu1g00788 480 PANTHER PROTEIN DA1-RELATED 2 3 479 IPR045218 -
Lapu1g00788 480 SMART lim_4 116 167 IPR001781 -
Lapu1g00788 480 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 207 - -
Lapu1g00788 480 Gene3D Cysteine Rich Protein 111 173 - -
Lapu1g00788 480 MobiDBLite consensus disorder prediction 405 422 - -
Lapu1g00788 480 MobiDBLite consensus disorder prediction 11 50 - -
Lapu1g00788 480 Pfam Protein DA1 265 474 IPR022087 -
Lapu1g00788 480 ProSitePatterns LIM zinc-binding domain signature. 117 150 IPR001781 -
Lapu1g00788 480 ProSiteProfiles LIM domain profile. 115 174 IPR001781 -
Lapu1g00788 480 Pfam LIM domain 117 169 IPR001781 -
Lapu1g00788 480 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00788 Lapu-Chr1 21316930 21322845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu1g00788 DA1-like 3.6e-101 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00788 - - gmx:100798829 876.7