Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00764 ATGGAATTCGAGACCCTATACCCAACTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAAAGAGTCACTACACAGAATGGACTAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGATACTCCTGACAGATGGCTGAGGGTTGCAGCCATGCTCCCGGGAAAAACTGTCAATGATGTGATCAAACAGTACAGAGAATTGGAAGAAGATGTTAGTGAAATAGAAGCAGGGAGGATTCCGGTTCCTGGATATCTTACCTCTTCTTTCTCATTGGAGATGGTTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAGCTGTCAGGAGTTCTGATCAGGAAAGGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTAAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAGAGGAGGCCTAGTATCCATGATATCACCATTGTTAATCTTACATCAGACCAAGAGGAGCCTCTTTTATATAATGAATCTCACATGTCCTCGGAGAAACTGAAGCTAAATGGCATGCCAAAAGTACAACTTGAATGGATTAATGGCCACAACAATATTGGTTCCCTTATGGTTTTCAGCCCAAATTATGATACGGTGATGTCACCTTCATCTGGCATCGTATCTTCGAAGACCCTCAAGTTGCAAGGGCAGGATTTCTATGAATGTGTTTTTCATGAGACCTATGCCAAGCTTAAAAGTCCAGGTTTCAGGACAACTTCAAGAGACTTCAACAAGGAAGCTATGTTTGGTATTCATGCACTGTAA 912 0.4145 MEFETLYPTCFMSNSNWFVQKSHYTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGKTVNDVIKQYRELEEDVSEIEAGRIPVPGYLTSSFSLEMVDNQCYDACRKKPAAVRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQEEPLLYNESHMSSEKLKLNGMPKVQLEWINGHNNIGSLMVFSPNYDTVMSPSSGIVSSKTLKLQGQDFYECVFHETYAKLKSPGFRTTSRDFNKEAMFGIHAL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00764 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Lapu1g00764 303 CDD SANT 26 72 IPR001005 -
Lapu1g00764 303 Gene3D - 125 176 - -
Lapu1g00764 303 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Lapu1g00764 303 FunFam Transcription factor SRM1 19 86 - -
Lapu1g00764 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Lapu1g00764 303 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Lapu1g00764 303 Gene3D - 19 86 - -
Lapu1g00764 303 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Lapu1g00764 303 SMART sant 23 75 IPR001005 -
Lapu1g00764 303 SMART sant 123 173 IPR001005 -
Lapu1g00764 303 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Lapu1g00764 303 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Lapu1g00764 303 ProSiteProfiles Myb-like domain profile. 27 73 IPR001005 -
Lapu1g00764 303 FunFam transcription factor MYB1R1 125 176 - -
Lapu1g00764 303 CDD SANT 126 170 IPR001005 -
Lapu1g00764 303 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Lapu1g00764 303 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 223 IPR043363 -
Lapu1g00764 303 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00764 Lapu-Chr1 21088983 21091403 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g00764 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00764 - - gmx:100783469 533.102