Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00752 ATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTACTTGACGAAGGGCACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATTCTTCTCTCAGGGACTCCTTTCCAGAACAACTTTTTGGAACTTTACAATATTTTGTCCTTAATGAAACCATCTTTTCCTGACAGCATCCCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAGGGCACCAAAGGAAAGCTTCGAAAGATGTTAGCTGGGAACCTGTTTCTTCTGGAAATCCAGATGATGAAAAAATAAACCAGCTAAAATTGCTGATGGACCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTCTGAAGCCAGATAGTTTGCAGCAAGAAACTCTGGAGAGCATTGAACCCTTTCAGAACGTACTAAATTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCACCTGCTCTTTGTCAGAAAAAGAAGAATCTATTGTTGACAAGGATAAGTTGGAAAAACTTAGATTGAACCCTTATGCAGGGGTGAAAACCAAATTTCTGATCGAGTTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAAACTTAATCAAGGACCAGCTCGAGTCAGCCTTCAATTGGATTGTGGGGATGGAAGTGTTATATATGTATGGCAGGCTTGACCAAAAGCAAAAACAATCCCTTATTCATAGTTTCAATGATGCAAATAGCCAAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAGTTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCTTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAAGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCTTGAATGCACCAAATATTGCAAACAAGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAGTAATGCTGAAAGTGATAACCTCAAGAGTAATGGAGTAGTTATTGAGGATTTTGAGGATAGAGTTCTTGATCTCATGGTTCAGCATGAAAAACTCAAGGATATGATTGGTGAATGTCTGATTCAACCAAATAAGAGAGATTTGGAGATTTTGGGCCCATGA 1242 0.3969 MGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILSLMKPSFPDSIPQELKKFCQSRLGHQRKASKDVSWEPVSSGNPDDEKINQLKLLMDPFVHVHKGSILQKNLPGLRDCVLVLKPDSLQQETLESIEPFQNVLNFEHKLALVSVHPSLFLTCSLSEKEESIVDKDKLEKLRLNPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLNLIKDQLESAFNWIVGMEVLYMYGRLDQKQKQSLIHSFNDANSQAKVLLASIKASSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQGTLECTKYCKQAEKNRLSELVFSNSNAESDNLKSNGVVIEDFEDRVLDLMVQHEKLKDMIGECLIQPNKRDLEILGP* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00752 413 CDD SF2_C_SNF 180 334 - -
Lapu1g00752 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 211 386 IPR001650 -
Lapu1g00752 413 Pfam Helicase conserved C-terminal domain 208 323 IPR001650 -
Lapu1g00752 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 370 IPR027417 -
Lapu1g00752 413 Coils Coil 375 395 - -
Lapu1g00752 413 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 407 IPR044567 GO:0080188
Lapu1g00752 413 Pfam SNF2-related domain 12 151 IPR000330 GO:0005524|GO:0140658
Lapu1g00752 413 Gene3D - 2 109 IPR038718 -
Lapu1g00752 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 64 IPR014001 -
Lapu1g00752 413 Gene3D - 124 401 IPR027417 -
Lapu1g00752 413 SMART helicmild6 238 323 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00752 Lapu-Chr1 20956247 20959134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00752 220 369 RAD5 or RAD16-like Gene Family AT5G43530 36.000 2.22e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu1g00752 SNF2_N 1.1e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00752 K10875 - gmx:100812737 709.909