Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00748 ATGACTTCAAGACATAACCAAGGGGATGACTCTCATGGGGATAGTGCTTCAAAGCCAATCCACTTTTTCAGGATCATGCTCGCCCAGAACCTTCTGCATGGAAAGCTAAGGCTTCCATCAAAGTTTGTGAGCAAATATGGAAATCACCTACCCAACACAATGTTTCTTAAGCTTCCTAACGATGCAGAATGGGAAGTGAAATTGGAGAAATGTGCTGGCAGTGTTTGGTTTGAGCAAGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTAGCCCATGGACACCTTTTGGTTTTCAAATACAATGGAACATCTCATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTTAACAAAGCAAATCACAAAAGGGCCACAATTGATAGTGAAGACATTCAACCACCTAAGACACAGAAAACAACTCAAAATAAGAAAAAGTGTCAGTCCAATTTGCAGCACATT 477 0.4109 MTSRHNQGDDSHGDSASKPIHFFRIMLAQNLLHGKLRLPSKFVSKYGNHLPNTMFLKLPNDAEWEVKLEKCAGSVWFEQGWKEFVEHHSLAHGHLLVFKYNGTSHFHVLICDMSCMEIDYPVNKANHKRATIDSEDIQPPKTQKTTQNKKKCQSNLQHI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00748 159 SUPERFAMILY DNA-binding pseudobarrel domain 17 114 IPR015300 -
Lapu1g00748 159 PANTHER B3 DOMAIN-CONTAINING 15 152 - -
Lapu1g00748 159 MobiDBLite consensus disorder prediction 131 159 - -
Lapu1g00748 159 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Lapu1g00748 159 Pfam B3 DNA binding domain 28 112 IPR003340 GO:0003677
Lapu1g00748 159 CDD B3_DNA 21 112 IPR003340 GO:0003677
Lapu1g00748 159 SMART B3_2 22 114 IPR003340 GO:0003677
Lapu1g00748 159 Gene3D - 14 115 IPR015300 -
Lapu1g00748 159 MobiDBLite consensus disorder prediction 136 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00748 Lapu-Chr1 20919976 20920809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00748 22 138 B3 DNA Binding Superfamily AT1G49475 35.043 5.81e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu1g00748 B3 2.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00748 - - pvu:PHAVU_008G140100g 265.388