Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00738 ATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTCTTCTCCTCCTCCACATCCATCACCATCTCCACTATCACCACCACCATCTCATCATCATCATCATCATCATTATCATCACCAACATCTTCTACCTCAAGCTCAAACTCATGTACCAAGCATGAGTCCAAAACAAGTCCTCCAGATGATTCAACAACGGCTCAAAATCAAAACACCCCAAATAGCAAGCAATGCAGGAAAAGACAAAGAAATGGCAGTGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCAGAGATGGCAGCCAGAGCACACGATGTGGCAGCTTTAGCCATCAAGGGTCATTCAGCTTACCTCAATTTCCCCAATTTGGCTCAAGATCTTCCAAGGCCCATCAGCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTTTCTTTGATGATGATGATGATCAACATTGTGAAGCTGAAAAGGCTGAACAAAACCATGCAGAACAAGCTTCATCTTCAACTCTATGCATGGACAATACTGATGCAGAGCAAGTTCAAGCAGAACAAGCTTCATCTTCAACTCTATCCATGGACACTACTCAAGGGTCTTCAACTTCTCACTCTACAGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTTTTCCTATTCTTCTTCTTGGCGTTTATGTGCTGTTGATAGTGGATTCAGGCTTGAAGAGCAACTTTTGTGGGAGAGTTACTAG 855 0.4421 MESDAGENLFGTFFSSSTSITISTITTTISSSSSSSLSSPTSSTSSSNSCTKHESKTSPPDDSTTAQNQNTPNSKQCRKRQRNGSDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQDLPRPISTSPKDIQAAAAKAATTFFDDDDDQHCEAEKAEQNHAEQASSSTLCMDNTDAEQVQAEQASSSTLSMDTTQGSSTSHSTADDDTLFDLPDLFPDGNNGLFSYSSSWRLCAVDSGFRLEEQLLWESY* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00738 284 FunFam Ethylene-responsive transcription factor 2 90 149 - -
Lapu1g00738 284 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Lapu1g00738 284 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Lapu1g00738 284 MobiDBLite consensus disorder prediction 210 239 - -
Lapu1g00738 284 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Lapu1g00738 284 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Lapu1g00738 284 Pfam AP2 domain 90 141 IPR001471 GO:0003700|GO:0006355
Lapu1g00738 284 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Lapu1g00738 284 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 59 249 - -
Lapu1g00738 284 MobiDBLite consensus disorder prediction 79 93 - -
Lapu1g00738 284 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Lapu1g00738 284 MobiDBLite consensus disorder prediction 26 93 - -
Lapu1g00738 284 CDD AP2 90 150 IPR001471 GO:0003700|GO:0006355
Lapu1g00738 284 MobiDBLite consensus disorder prediction 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00738 Lapu-Chr1 20817397 20818460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00738 78 280 AP2-EREBP Transcription Factor Family AT2G44940 54.502 5.00e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g00738 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00738 - - pvu:PHAVU_008G141000g 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00738 1 20817397 20818460 Lapu1g00738 1 20817397 20818460 ECH