Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00735 ATGGACACCATGAATCTCACTTACGAACAGAGACTTCAAGTTGTTGCCAAAATCATACTAGACGACGAGGCACGCGTCTGCGACGCGCCACCGTGTGAAGAAGAGCTTGGTCTCAGGGCGAAGCTCAAGCCGCACCAGGTGGAAGGGGTTTCCTGGCTAATACGGAGGTACAAACTCGGCGTCAACGTTGTACTCGGGGATGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCGGTTGTCTGATGGGCCATTCTTGGTTATATGTCCTTTAAGTGTCACTGATGGTTGGGTGTTAGAGATAGGCAAATTTGCCCCCAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAAAATAGGTGCAATCTACGCATGAAAATGCATGAACATGTAACAAGACAGGCATCAACAAGGAATGTCTTGTTGCCTTTTGATGTGCTATTAACGTCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAAAGGCTTAAAAATCCGTCTAGTGTTTTATTTAATGTTCTCAAAGATCGCTACATAATGCCAAGACGGTTGTTGATGACTGGCACGCCTATTCAAAACAATCTTTCTGAACTGTGGGCGTTGATGTATCTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGACATCAGTGATCTTTCATCAGTTCATGATCCTCCAAAGGTAAGGGAAAGGCTTAAAACTTTAAGAAGTGTATTGGGTGCCTTCATGCTTCGACGTACCAAATCAAAGCTTATCGAGTGTGGAAATTTGGTGCTGCCACCTCTCACTCAGACAACTGTGTTAGTTCCCCTTGTCATCCTGCAGAAGAAGGTCTATATGTCAATATTGAGGAAGGAACTGCATAAGCTACTTGCACTATCCTCTGGAACTTCAAATCACCCATCACTACAGAATATTGTGATACAACTAAGGAAAGCCTGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCGTATGAAGAAGGTGAACATCTGATTCAGGCCAGTGGTAAACTACTTATTCTGGATCAACTTCTTCAGAAGTTACATTATTCGGGACACCGTGTCCTTCTTTTTGCTCAAATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCCTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTACTACAGGCTTGACTTCTGAAGCTGACCAAAGTGGAGCCTTTGTCTTTATGATCTCAACAAGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCCCATAGAATTGGCCAGATGAACCATGTGTTGTGTATAAACCTTGTTACAGAGAAGACAGTGGAGGAAGTAATTATGCGGAGGGCAGAGAGAAAATTGCTTCTCAGCATCAATGTTATTGGTGATAACATTCTCAAACATGATGACAATGAAGAATCATCTGAAGTTGAAACTGGCGATTTGAAATCCATCATATTTGGGTTACATATGTTAGATCCCACTGAGATCACTGATGGAAATCATAGGGATATGAACTTACCAGAAATTAGTGTTATGGCTGACAAGGTGCTTGCCTTGCGTGATGAACAAATACTTGATAAGGATGAAAGGAAATTTGAGGTCAATCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAGGTTATACTTCTCTCTCTCGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCTTGGGTTAAAAAATTTGAGGAAGTGTCTAAGTCAAGTTGCGACTCAATGATGGATTGGAGGAGCAAAAGGAACTTAGAAGAGGAAAAGAGTCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTATCTAGGTGGAAAGCTCTTGGATATCAATCATTGAATGTAAAAGACACTCTCATCCAAACAGACAATGACATCACATCAGCTACTGGGTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATCTTTGTTCATCTGAACCTGCTATGATGTGCTTCCTCTGTGTTGACACCTCTGGACATTGGGGCCGTGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATACAAACGGGCTTCTGAACATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGAAGACGGTTGTGATGAACAAGATATGGATGGAAATACTCCCAAGATGGTTGCTTTATCTGTGGTTCAGTCATATAATCCAAGGCGCAAAATCCCACGCAGTGAGATCTCACTTCCCCATTTGGAAAGCTGCTTAGCAAAGGCAGCATTCTCAGCCGCTCAGAATTCTGCATGTATTATATCAATCATATAA 2538 0.4216 MDTMNLTYEQRLQVVAKIILDDEARVCDAPPCEEELGLRAKLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVCRLSDGPFLVICPLSVTDGWVLEIGKFAPKLEVFKYVGDKENRCNLRMKMHEHVTRQASTRNVLLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYLCMPSVFGTLDQFLSTFKDISDLSSVHDPPKVRERLKTLRSVLGAFMLRRTKSKLIECGNLVLPPLTQTTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNHPSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLIQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSATTGLTSEADQSGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLLLSINVIGDNILKHDDNEESSEVETGDLKSIIFGLHMLDPTEITDGNHRDMNLPEISVMADKVLALRDEQILDKDERKFEVNPRNILQGDDVKEGGYTSLSRDLGLDEASYLSWVKKFEEVSKSSCDSMMDWRSKRNLEEEKSLKLESARKKAEEKKLSRWKALGYQSLNVKDTLIQTDNDITSATGSVHFVYGDCTAPSNLCSSEPAMMCFLCVDTSGHWGRGGMFDALSKLSTSIGDAYKRASEHGDLHLGDLHLIRLEDGCDEQDMDGNTPKMVALSVVQSYNPRRKIPRSEISLPHLESCLAKAAFSAAQNSACIISII* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00735 845 SMART ultradead3 38 239 IPR014001 -
Lapu1g00735 845 Gene3D Leucine Aminopeptidase, subunit E, domain 1 707 844 IPR043472 -
Lapu1g00735 845 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 34 601 IPR031053 GO:0003678|GO:0006281|GO:0006338
Lapu1g00735 845 Pfam SNF2-related domain 60 349 IPR000330 GO:0005524|GO:0140658
Lapu1g00735 845 Pfam Helicase conserved C-terminal domain 370 494 IPR001650 -
Lapu1g00735 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 538 IPR027417 -
Lapu1g00735 845 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 551 IPR001650 -
Lapu1g00735 845 FunFam Putative helicase CHR10 287 604 - -
Lapu1g00735 845 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 231 IPR014001 -
Lapu1g00735 845 Coils Coil 658 678 - -
Lapu1g00735 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 276 IPR027417 -
Lapu1g00735 845 Gene3D - 287 603 IPR027417 -
Lapu1g00735 845 SMART helicmild6 399 494 IPR001650 -
Lapu1g00735 845 SUPERFAMILY Macro domain-like 711 839 IPR043472 -
Lapu1g00735 845 CDD SF2_C_SNF 368 505 - -
Lapu1g00735 845 Gene3D - 18 286 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00735 Lapu-Chr1 20734468 20760489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00735 22 532 RAD5 or RAD16-like Gene Family AT1G02670 26.351 1.44e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu1g00735 SNF2_N 2.8e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00735 K20092 - gmx:100797182 1351.27