Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00729 ATGTTGGATTACGAATGGGGGAACCCATCAATGATACTACTCGCCGGAAATGAAGGCGCCGCCGGGGAACCCGACCAAACGCGCCGGCAAGTCTTCGACCAAACCTTCAGCATGCTAACTGACCCCATTCTACATGGCTCAACACCAACAGCCAACACCGGTTTCTCACACCACCACCCCTTCAACCCACCGCAACCGCACCAGCACCACCCGTTCTTGGACCCACGCGCCTTCCAAAGCGCGTCCACAACTTCCTTCACGCCACCGCCTTCGTTACTCTCACTTAACCCAATCTCACCTTTAGTCCCCTCCCACTGTGGGCTTGGACCTGGCTCCGGACTTGGATTTCTGCTCATGTCCAAGTCCGAGGATGTCACTTCGCCCATGAACTTCGAGGGCTCGGGTCACGGTCTCGGGCCTGGACCCGGGCTTGCCCTCAACCTCGGAGGCCGCACTTATTTTGCGGCTTCCAACGAAGACACCGTGGACAGATTCTACCGTTGCAAGACCGTAGAATCGGTTTCCACTGTTTCGTCAAATTTGCCACGCTGTCAGGCAGAAGGATGTAATACGGACCTCTCCGAAGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAAAGGAGCTGCAGGAAGAGACTGGCAGATCATAATCGACGCAGAAGAAAAACTCAGCAGGCAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCCTCGCCTGAATCTGGAGCTCAATCTTCGTCATCGCTGAAGGTGGCAGTGTCACCACCAGATTATTTCCAGCAAAGACCAAAGCAAAATAGAGGCTCTTCTCCGTCAACATCATCTGGGTCATTGTTTTTCTCAAGTGGGGCCAATTTGCATGGCTAA 990 0.5384 MLDYEWGNPSMILLAGNEGAAGEPDQTRRQVFDQTFSMLTDPILHGSTPTANTGFSHHHPFNPPQPHQHHPFLDPRAFQSASTTSFTPPPSLLSLNPISPLVPSHCGLGPGSGLGFLLMSKSEDVTSPMNFEGSGHGLGPGPGLALNLGGRTYFAASNEDTVDRFYRCKTVESVSTVSSNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQDIHKSQPSLDNVTWSSPESGAQSSSSLKVAVSPPDYFQQRPKQNRGSSPSTSSGSLFFSSGANLHG* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00729 329 Gene3D - 179 245 IPR036893 GO:0003677|GO:0005634
Lapu1g00729 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 158 316 IPR044817 GO:0003677
Lapu1g00729 329 SUPERFAMILY SBT domain 182 261 IPR036893 GO:0003677|GO:0005634
Lapu1g00729 329 FunFam Squamosa promoter-binding-like protein 14 175 245 - -
Lapu1g00729 329 MobiDBLite consensus disorder prediction 263 329 - -
Lapu1g00729 329 MobiDBLite consensus disorder prediction 49 70 - -
Lapu1g00729 329 Pfam SBP domain 184 257 IPR004333 GO:0003677
Lapu1g00729 329 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
Lapu1g00729 329 MobiDBLite consensus disorder prediction 249 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00729 Lapu-Chr1 20649330 20652369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00729 1 231 SBP-box Gene Family AT1G02065 42.339 4.15e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu1g00729 SBP 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00729 - - var:108328505 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00729 1 20649330 20652369 Lapu1g00729 1 20649330 20652369 ECH