Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00728 ATGGAGTTCGGAGGGAACATCTTCTGCCTCGCCAACAGAGACCAAAATGGAAATGCTAACGGTAGCTCTTTCGCTTGGGATTCATGGCAAACAACCACTTCTAATAATAACAACAATAACAACACTTCCAGGTTGGTCAACGCTTTCCACTCCCCCGTCACCGCCCTCCCCACGCCGGAGGGCTCCTCCGCCGCCAACCGTCACGAAGCTGCGGGTCTGGCCAACGCTCTCATGTTCCTCCCTCAAAACGGCGGCCTTTTGCGTCACCGCCACCACCACCAGCATCCGTACGGCGGGGATGGGTCGCACGTGCACCCAGACCCGCACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGATGCTAGTGGAAGTGGAACTGTTGCTGCTGCAGCTACTTTTGGCGGGGGGTTGGTGTTGGGGGATAAGAGAGGGAAAGGAGGGTATTCCGGCAACGGGGCGGCGGTGAAGGCGGTGGGGTTGACGACAGCGACGGTGCCGAGGTGTCAGGTTGAAGGGTGCCAGGTGGCGCTGGTGAACGCGAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGCTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGTAGGAGAAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCACGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCTGCATTGCGTGAATTGATAGCAGAAAACCGGGCAGCAATCATGGCGAGGCAGTTTGTATCAGACAGAGATTGGCATCACCACCATGCAGTGGAAGACTTCAAGGAGATCCAACCTGAGTCCAATTACTTCCCACAACAGATGTTTCCCCAGACACAGTGA 1008 0.5397 MEFGGNIFCLANRDQNGNANGSSFAWDSWQTTTSNNNNNNNTSRLVNAFHSPVTALPTPEGSSAANRHEAAGLANALMFLPQNGGLLRHRHHHQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVAAAATFGGGLVLGDKRGKGGYSGNGAAVKAVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHHHHAVEDFKEIQPESNYFPQQMFPQTQ* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00728 335 FunFam Squamosa promoter-binding-like protein 14 163 232 - -
Lapu1g00728 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 277 IPR044817 GO:0003677
Lapu1g00728 335 Gene3D - 163 232 IPR036893 GO:0003677|GO:0005634
Lapu1g00728 335 MobiDBLite consensus disorder prediction 235 256 - -
Lapu1g00728 335 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
Lapu1g00728 335 Pfam SBP domain 171 244 IPR004333 GO:0003677
Lapu1g00728 335 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00728 Lapu-Chr1 20619300 20624448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00728 111 244 SBP-box Gene Family AT1G27360 52.985 5.84e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu1g00728 SBP 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00728 - - var:108327478 562.762