Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00715 ATGGAGTTTAGTCCAAGCTTCCCTGAGAAAATTCACTACCTTTCTGGGATTTTCCCTGAAATCAAATCAGAGATTCCTGTGTCGGAAGAGAACACGAGCTTCATGTACCAAAGCAATTTCAACCATTTTCAGCAGCACCATCCCCTGAATGAGCCAAACCATGGCCACCCTGAAAGTTTTTTCACAGAGGGTTCTTCCTCCATCATCACCCCATTATTCTCTTTGTCCTCAGCAACCCCTTCTTCAGGTGGCTCATCCTCCTACAAACCCACTTACCCCAATGAGTCCCTCAAAGGAGGCTATGCCAACCCCTACTACCCCATGCCTTATGCATCAAACAACACCAATGCTGAATCCATGCATGGTCACCCCAACAAGGTCATCTGGGACTTTTCCCAGAAAGTTCCCCTTCACTCTGGTGCAAGTGCAACTTCAGATCCTCAGGTGCAGAGGAAGACTAATGGCCAAATTCAGCACAGGATGACCAACATAATCAAAGGCCAGTGGAGTGCTGAAGAGGACAGCATCCTTGTCCAATTGGTGAAACGCTTCGGGATCAAAAAATGGTCGCAGATCGCCAGGTTGCTGAACGGCAGGAAGGAGTCATGGAGCGAAGAGGAGGACAAAATCCTGATTGAAGCTCACAAGGAACTTGGGAACAAATGGGCAGAGATTGCAAGAAGAATGCCTGGTAGGACCGAAAACACCATCAAGAACCACTGGAACGCTACGAAGCGCCGCCAGAAGGCCAAGAGGCAGAGGAACAAGCGCAGAAGCTCCAAGGGTGCACCCACACTTCTCGAGAGCTACATAAGGAAAGTCACTGCGGCGGAAGAGTCTGAGAAGGAGTTGAAGAACTCCATGAGCAAGATGAACCTGAATGACACCACCAGCACCACCAATGCGGGTCTCTTCCGGGTTCGGTATGAGAGCTCCGAAGGTGACTTCAGCTCCGAGGAGGAGGAGCTTGGGTGGAGCCTGCAGCACCACGTGCCATGTGGTGGTGAGGGTGGCTACGTGCCACTGATGGTGAACGCTGGGGAAGAGAGCGTGATTGATTACGAGGTTGCCATGCAGATATCACCGGAGGTTCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGGTTAA 1143 0.5048 MEFSPSFPEKIHYLSGIFPEIKSEIPVSEENTSFMYQSNFNHFQQHHPLNEPNHGHPESFFTEGSSSIITPLFSLSSATPSSGGSSSYKPTYPNESLKGGYANPYYPMPYASNNTNAESMHGHPNKVIWDFSQKVPLHSGASATSDPQVQRKTNGQIQHRMTNIIKGQWSAEEDSILVQLVKRFGIKKWSQIARLLNGRKESWSEEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRSSKGAPTLLESYIRKVTAAEESEKELKNSMSKMNLNDTTSTTNAGLFRVRYESSEGDFSSEEEELGWSLQHHVPCGGEGGYVPLMVNAGEESVIDYEVAMQISPEVQMRKEMDLMEMIYRKG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00715 380 CDD SANT 202 245 IPR001005 -
Lapu1g00715 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 249 IPR017930 -
Lapu1g00715 380 Gene3D - 158 201 - -
Lapu1g00715 380 Coils Coil 267 287 - -
Lapu1g00715 380 SUPERFAMILY Homeodomain-like 163 241 IPR009057 -
Lapu1g00715 380 ProSiteProfiles Myb-like domain profile. 161 196 IPR001005 -
Lapu1g00715 380 MobiDBLite consensus disorder prediction 242 259 - -
Lapu1g00715 380 Pfam Myb-like DNA-binding domain 169 199 - -
Lapu1g00715 380 MobiDBLite consensus disorder prediction 239 262 - -
Lapu1g00715 380 ProSiteProfiles Myb-like domain profile. 199 245 IPR001005 -
Lapu1g00715 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 198 IPR017930 -
Lapu1g00715 380 Pfam Myb-like DNA-binding domain 200 242 IPR001005 -
Lapu1g00715 380 Gene3D - 202 265 - -
Lapu1g00715 380 PANTHER MYB PROTEIN-RELATED 200 265 - -
Lapu1g00715 380 SMART sant 165 197 IPR001005 -
Lapu1g00715 380 SMART sant 199 247 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00715 Lapu-Chr1 20270544 20274895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00715 162 274 MYB Transcription Factor Family AT4G18770 54.962 6.95e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g00715 Myb_DNA-binding 9.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00715 K09422 - gmx:100805329 413.69