Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00711 ATGCTTCCACTGCAATTTGGCACGCGCCCTCACTACCCTCCATCGCTGTTCCTGAGCAGCTCCAACGCTTGTTCCTCCTCTCGCCTCCTCTACCACAACAGAAACAACAAGATGTACCTTGTTCGCTCCAACGTCGGAACCCCCAACCTTAGGGTTTTCGCTGTGACTGGCAGCTCCTCATACAAGATGAACCTCAACGAGTACCTCGTCACTCTCGAGAAGCCCCTCGGCATTCGATTCGCGCTAACCGCCGACGGAAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCAGGATAATCATGGTGGGCGACACTTTGAAGAAAGCTGGCGATTCTTCTCAGAACACTCTCGTCCAGATTAAAGACGTTGGAAATATACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCTATTCAACTACTGCACAAGATGAATGATCTTGAAATAGTTTTTAATAGAGGGCGAGTTCCTATTGTCACATGGAGCAAGACCCTATTGGCATCAAATTTACAATCATCTAGTGAGAGCAGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTTAAACCAAATGCAAGCAAGTTGTTGGGCAACCAAAATCAACATACCATCACCCATGGTGAGAGAAACTTCTTTCCTGAACACACAACACAAATTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGAGATTGGGGTCATGGAAGTTTCCCACTTGAGGAGTATATTCAGGCTTTAGATCGTTCCAAGGATGAAATGTACTATAACCACTCTCTTGGTATGCGTTATAGTAAGATTACAGAGCAAATTTATGTGGGATCGTGTATACAAACAGAAGATGATGTAGAGACCTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGGATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATTCGGGATGGAGATTCTTATGATATGAGAAAAAAACTCCCATTTTGTGTGGGGCTTTTATTGCGGTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCATGTGTGATTGCCTACCTACATTGGATGACGGATGTTTCCCTTCATGCGGCATATACTTGGGTCACTGGGATGCACACTTGCAGACCTGATAGGCCGGCAATCGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAATGGCAAACATGATGGACCTCCTACACATGCTGTGACATTTGTGTGGAATGGTCATGAGGGTGAGGATGTAACTTTGGTTGGGGACTTTACCGGAAATTGGAAAGAACCACTCAAGGGAAAGTTCCAAGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTAAATGGGCAATGGAAGCATTCGACCGCTTCACCAGCCGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCAAATGTTCGGCCTTCAGTTCAGCAGCAGCTGAAAGACGCTAACGTTATCAAGGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGCATCGCTTTCTCTATCTGTCCGATCACATTAGCCCCCAAATAG 1749 0.4385 MLPLQFGTRPHYPPSLFLSSSNACSSSRLLYHNRNNKMYLVRSNVGTPNLRVFAVTGSSSYKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVQIKDVGNIQKVLNEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIVTWSKTLLASNLQSSSESSGNSGFLMFNSKFLKPNASKLLGNQNQHTITHGERNFFPEHTTQIACVFTEEVCGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGITAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVENGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKGKFQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETANVRPSVQQQLKDANVIKVIERPLNEKERFMLAKAARCIAFSICPITLAPK* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00711 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 580 - -
Lapu1g00711 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Lapu1g00711 582 Pfam Dual specificity phosphatase, catalytic domain 291 412 IPR000340 GO:0008138|GO:0016311
Lapu1g00711 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 415 IPR029021 -
Lapu1g00711 582 Pfam Glycogen recognition site of AMP-activated protein kinase 449 531 IPR032640 -
Lapu1g00711 582 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 438 IPR020422 GO:0006470|GO:0008138
Lapu1g00711 582 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 275 441 - -
Lapu1g00711 582 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 436 532 - -
Lapu1g00711 582 SUPERFAMILY E set domains 446 529 IPR014756 -
Lapu1g00711 582 CDD E_set_AMPKbeta_like_N 449 528 - -
Lapu1g00711 582 Gene3D Protein tyrosine phosphatase superfamily 275 546 IPR029021 -
Lapu1g00711 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203
Lapu1g00711 582 SUPERFAMILY PDZ domain-like 72 163 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00711 Lapu-Chr1 20181049 20191578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00711 134 582 Protein tyrosine phosphatase (PTP) family AT3G01510 69.488 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00711 - - gmx:100814503 1065.06