Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00709 ATGGATTGCAGAATAGAGAGCGCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCATACCATTCGGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTTCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGACAGCCCTAATTCTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGGAACAAATGCTGGAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGGCCATTGGTGGTGGAGCAAGAGGACCACAAGTTGTTGCATTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGGAAGAGTGTGCTTAACCGATGAGCATGAGAACATAATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGCATTAGACCAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAAAGGAGGATTCAAGATTTTCTTTGCAATGGTGAACCTATTTGGACAATTCGGGCTAGAGGAGGAAGAGCCAGGGTTCTTGTGGGTCATGGTTTGGATCATGACCTTGAATGTTTGCAAATAGAATATCGAACAGAAAAAATAAGGGACACTGCAAAATACCCTCCCCTGATGAAAACGAGCAAGCTCAGCAACTCACTCAAGTATGACATTCAAGTTGGAATTCAGGATCCTTATGATGACTGTATTGCAACTATGAGGCTGTACACGAGAATGAGATCCCAAGTACACAAAACACAGGATTACCCTTTGGTGTCTGACCCCCAGAACAGGAACAATTTTGCTTCGTGGAGGCAAAGTGAACTTGAAAGAATGAGTCCTGAACAAATGCTGGAAATATCAAGGTCTGACTACTATTGCTGGTGCTTGGATTCCTTGTATAATCCCTGA 1047 0.4346 MDCRIESAETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFSYRGCKFCLKVFDSPNSRRIHQEKCQHSGTNAGIIGRFSNLGLRDNLAIGGGARGPQVVALACKMVGGGSDGSLDLCGRVCLTDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPIWTIRARGGRARVLVGHGLDHDLECLQIEYRTEKIRDTAKYPPLMKTSKLSNSLKYDIQVGIQDPYDDCIATMRLYTRMRSQVHKTQDYPLVSDPQNRNNFASWRQSELERMSPEQMLEISRSDYYCWCLDSLYNP* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00709 348 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lapu1g00709 348 SMART c2h2final6 13 37 IPR013087 -
Lapu1g00709 348 SMART c2h2final6 42 62 IPR013087 -
Lapu1g00709 348 SMART c2h2final6 77 101 IPR013087 -
Lapu1g00709 348 CDD REX4_like 133 289 IPR037431 GO:0006364|GO:0008408
Lapu1g00709 348 SMART exoiiiendus 131 297 IPR013520 -
Lapu1g00709 348 Pfam Exonuclease 155 253 IPR013520 -
Lapu1g00709 348 SUPERFAMILY Ribonuclease H-like 149 292 IPR012337 -
Lapu1g00709 348 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Lapu1g00709 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Lapu1g00709 348 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 343 IPR047021 GO:0004527
Lapu1g00709 348 Gene3D - 129 307 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00709 Lapu-Chr1 20163871 20165865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00709 1 345 C2H2 Transcription Factor Family AT3G27970 72.472 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00709 - - gmx:100813973 673.7