Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00708 ATGGCGGCAATATCAATACCTTCTCACATGAAAGCTTGGACTTACTCCGAGTATGGAAAATCCAGCGAAGTTCTCAAGTTTAACCACAGCGTGCCTTTACCGCCGGTGAAGGAAGATCAGGTTCTCATCAAGGTCGCTGCTGCTTCCCTTAACCCCATTGATTATAAGAGAATGGAAGGTCATTTCAAGAACTCCGATTCCCCTCTACCTACTGCTCCGGGGTATGATGTTGCTGGAGTGGTGGTGAAAGTGGGAAGTGAAGTGAAGAAATTCAAGGTTGGGGATGAAGTTTACGGTGATATCAACGTGAAAGCTTTGGAATATCCAAAGGTGATTGGTTCTTTGGCTGAGTACACTGCTGCAGAAGAGAGACTATTGGCTCACAAGCCACAGAATCTGAGCTTCGCTGAGGCTGCTAGCCTTCCTTTAACACTTGAGACAGCTTATGAAGGCCTTGAAAGAACTGGGTTTTCTGCGGGGAAATCTATCCTTGTTCTTGGAGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCCAAGCATGTATATGGAGCATCCAAGGTAGCAGCCACAGCAAGCACTAGGAAACTGGAATTATTGAGGAATTTGGGGGCTGACTTGCCAATTGATTATACTAAAGAGAATTTTGAAGACCTGTCTGAAAAGTTTGATGTGGTGTATGATACAGTAGGGCAAACTGAACAGGCATTCAAGGCTTTGAAAGAAGGAGGCAAAGTTGTGACCATAGTACCACCTGGATTTCCTCCAGCTATCTTTTTCATTCTCAATACTGATGGGTGTATTTTAGAGAAATTAAACCCCTATTTTGAGAGTGGTAAGTTGAAGCCAATAATTGACCCCAAGAGCCCTTTTCCATTTTCTCAGGCTGTTGAAGCATTTTCCCATCTGGAAACAAACAGGGCAACTGGAAAAGTTGTTGTCTATCCCATTCCATGA 960 0.4427 MAAISIPSHMKAWTYSEYGKSSEVLKFNHSVPLPPVKEDQVLIKVAAASLNPIDYKRMEGHFKNSDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINVKALEYPKVIGSLAEYTAAEERLLAHKPQNLSFAEAASLPLTLETAYEGLERTGFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASTRKLELLRNLGADLPIDYTKENFEDLSEKFDVVYDTVGQTEQAFKALKEGGKVVTIVPPGFPPAIFFILNTDGCILEKLNPYFESGKLKPIIDPKSPFPFSQAVEAFSHLETNRATGKVVVYPIP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00708 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 319 IPR044626 GO:0016628
Lapu1g00708 319 Gene3D - 152 266 - -
Lapu1g00708 319 SMART PKS_ER_names_mod 20 315 IPR020843 GO:0016491
Lapu1g00708 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 286 IPR036291 -
Lapu1g00708 319 Gene3D - 17 315 - -
Lapu1g00708 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Lapu1g00708 319 Pfam Alcohol dehydrogenase GroES-like domain 39 104 IPR013154 -
Lapu1g00708 319 CDD MDR_like_2 10 315 - -
Lapu1g00708 319 SUPERFAMILY GroES-like 6 167 IPR011032 -
Lapu1g00708 319 Pfam Zinc-binding dehydrogenase 204 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00708 Lapu-Chr1 20139865 20143789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00708 29 231 Monolignol Biosynthesis Gene Families AT3G19450 24.464 7.30e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00708 K18980 - gmx:100817947 582.408