Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00705 ATGTATAGAATAATATCCACGCCGGCGTCTAAGTTCCGCCACTTAAGGCGACTCCGAACCCGACCCAAGACAACAACAGCGACAGAGGAGGAGCACGCGTTTCAGATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAAGGTGTTCCTCGTGACAAGCCTCCTCGCCCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTTGGTGGCCCCGCCTGCTTGGAGGCTGACCCCAAACTCAGCATCATCGTCACCATCCTCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGCACCGCCTTCGTTGCCCCCAACTCTAGAATCTTCGGCCGCGGCGACCTGGTCATGGACTCCCGCGAAATCGCCATGCGTTACCTCAAGTCTGATTTCGTCATTGACCTCGCCGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCGAGCACAAACGCAAGAACTGACCATGCCAACAACACTCTCGCTCTTTTTGTTCTCATTCAATATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGCGTAATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTGTTCTCTACATGCTAGCCAGCCATGTTACAGGAGCTACTTGGTATCTATCGTCAATAGGGAGGCAGTTTAACTGCTGGAAAACGCAGTGCCAAATAGAGAACAAATCACATACCCTCTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTGCCTGATAGGCAATACTGGCTAAACATCACCCATGTAATCACCAAATGTGACGCCAAGAGCAAAATCAACATCAAATATAAATTTGGGATGTTCGCAGAGGCTTTCCTGAATGATGTTGTCACTTCCAATTTCAAGGAAAGATACTTCTACTGTCTTTGGTGGGGTTTGAGAAATCTAAGCTCATACGGACAGAACTTGGACACCACCACATATCTTCCGGAGACATTATTTTGCATCATCTTATGCATTGCTGGATTGGTTCTCTTTTCTCTTTTAATTGGAAACATGGAGACGTACTTGTCATCAATGACAGTCAGACTTGAAGAGTGGAGGATTCGGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGTGTCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTAATGAAGAAGCCATACTGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCCTTCTTCTCTCAAATGGATGATCAACTTCTTGATGCAATTTGTGAACGCCTTGCTTCATCACTAAGCACTCAAGGCACCTACATATTTCGAGAGGGTGATCCGGTGGATGAAATGTTGTTCATCATCAGAGGGCAACTGGAGAGCTCCACGACCAACGGAGGAAGGTCTGGATTCTTCAACTGCATTAAACTCCGGCCAGGTGACTTCTGCGGAGAGGAATTGCTGACATGGGCCTTAATGCCAAACTCAACTCTCAACTTACCTTCTTCTACTCGTACTGTCAAAGCTCTTTCTGAAGTTGAAGCCTTTTCACTACAAGCAGAGGATCTGAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAACATGCGTTTAGGTATTATTCCCATCAATGGAGGACGTGGGGTTCTTGCTTCATACAAGCTGCTTGGAGACGGCATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCATTGCCTGAGACAGATGGAAGTGGAAATTTGGAGGATTATGAAATCGGGGAATCCTCAGGGAGTGCGAGAAAGGTTCAGAACCTTGGTGCAACTGTCTTGGCCTCAAAGTTTGCTGCCAATACAAGGAAAGGGACCCATAAGCTACCAGATCCTGTGCCCCAATTGTTCAAGCCAGACGAACCTGATTTTTCTTAG 2058 0.4738 MYRIISTPASKFRHLRRLRTRPKTTTATEEEHAFQILWRHQILDPDSDIVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLEADPKLSIIVTILRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGDLVMDSREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASTNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKTQCQIENKSHTLSCFSSYLDCNSLNLPDRQYWLNITHVITKCDAKSKINIKYKFGMFAEAFLNDVVTSNFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIILCIAGLVLFSLLIGNMETYLSSMTVRLEEWRIRKRDTEEWMRHRQLPPHLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTQGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRHQKRKATRELSLKEGLYYLSLPETDGSGNLEDYEIGESSGSARKVQNLGATVLASKFAANTRKGTHKLPDPVPQLFKPDEPDFS* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00705 685 CDD CAP_ED 452 583 IPR000595 -
Lapu1g00705 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 684 - -
Lapu1g00705 685 FunFam Cyclic nucleotide-gated ion channel 1 450 568 - -
Lapu1g00705 685 Pfam Cyclic nucleotide-binding domain 475 563 IPR000595 -
Lapu1g00705 685 SUPERFAMILY cAMP-binding domain-like 382 577 IPR018490 -
Lapu1g00705 685 Gene3D - 58 375 - -
Lapu1g00705 685 Gene3D Jelly Rolls 450 570 IPR014710 -
Lapu1g00705 685 Pfam Ion transport protein 52 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu1g00705 685 SMART cnmp_10 452 583 IPR000595 -
Lapu1g00705 685 ProSiteProfiles cAMP/cGMP binding motif profile. 452 582 IPR000595 -
Lapu1g00705 685 Gene3D Helix hairpin bin 376 443 - -
Lapu1g00705 685 MobiDBLite consensus disorder prediction 664 685 - -
Lapu1g00705 685 SUPERFAMILY Voltage-gated potassium channels 44 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00705 Lapu-Chr1 20103649 20107569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00705 10 685 Ion Channels AT5G14870 67.898 0.0 993
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00705 K05391 - gmx:100802812 1281.54