Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00702 ATGGCTTGGATTCGGCATCAAATCCAACAAAAAGATGGTTACATGAGCTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCGATTTGGGGTGCATTCAACAAAGAATCAATGACTTCTTCTTCTTCATCATCTTCTCCCTCACCACCATCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGATTCTAGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTTCTCATAAAGAACCCTTCTTCCTCAGCATCTGACCAATCCAATAGGAACCAGGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGTTGCAACAACTTTTCCATCTTCATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATATAAGGAGATAAAGGGGTCGAAGGAGCCATTTGATTGTGCTGTTTGTCTCTGTGAGTTTACTGAAAAGGACAAGCTCAGGTTGCTCCCTATGTGTAGCCATGCCTTTCATATCAGTTGTATAGACACCTGGCTTTTGTCAAACTCCTCATGCCCTCTTTGTAGGGGGTCCCTACTTACTCCTGGCTTTTCCCTTGAAAATCCTGTGTTTGATTTTGATGATTTGAGGGATGATGGGGGCTGGCCCTGCAATGGGGAACATGAGTTCACCACTAGGCAGAAAACGGTTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGGCTTGATGTGGAGGCGGAGGAGGCTGCAGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTACTCCATGGGATCTTATCAATACGTTCTTGGCAAGTCAGACCTCAGGATAACCTTGAGCCATAACCGACAAGGTCGTGATGCACAATTCGTGAAAGGAACAGAAAACTTGGAAAGACTTTCAGTTGAGGGGGATATTGAAGCAAAGAAGATTACAAGTGTCTGTAAAGGTGAGAGCTATTCTGTTTCCAAAATCTGGCAGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTGTGATACCCAGATGGGTATGCCCTCTTCTCTTAACACGGATTTGCCTTGGATGAGAGAAACAGGAAGGACATAA 1140 0.4447 MAWIRHQIQQKDGYMSYPPPVLPPPSPPIWGAFNKESMTSSSSSSSPSPPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASDQSNRNQENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGSKEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGSLLTPGFSLENPVFDFDDLRDDGGWPCNGEHEFTTRQKTVEIEETVVEKGVFPVRLGKFRRLDVEAEEAAGGETSSNNLDARRCYSMGSYQYVLGKSDLRITLSHNRQGRDAQFVKGTENLERLSVEGDIEAKKITSVCKGESYSVSKIWQWSKKGKFSVSCDTQMGMPSSLNTDLPWMRETGRT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00702 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 344 - -
Lapu1g00702 379 MobiDBLite consensus disorder prediction 33 54 - -
Lapu1g00702 379 Pfam Ring finger domain 150 193 IPR001841 -
Lapu1g00702 379 FunFam RING-H2 finger protein ATL46 113 198 - -
Lapu1g00702 379 SUPERFAMILY RING/U-box 130 199 - -
Lapu1g00702 379 SMART ring_2 151 192 IPR001841 -
Lapu1g00702 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 198 IPR013083 -
Lapu1g00702 379 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Lapu1g00702 379 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00702 Lapu-Chr1 20067756 20069878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00702 48 351 C3H Transcription Factor Family AT2G18650 43.658 1.93e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00702 - - cave:132183306 500.745