Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00700 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCGGTCGAAACCCTCGCCGGAAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGCGAAATGATTCGCAACGCCCATTTGCTCGGCTTCTTTCGTCGCATTTGCAAGCTTCTGTTCCTCCGAACCAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCTGCCCTCAAGCGCCGCACCGTCGTTGCCCGCCGCCGCCAGCGCGAAAACGCCCAAGCCAAAGTCCGCAAAACTGCGGAAAAATTGCTGCTCAATCATTTAAAGACACTAAGGTTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATAAATTTAATCACAAGGACTTTATTGGTCATTCAAGAGGGAGTCACGTAAAAGAGCTGGATGAAATGTCTGCAGATAAATCTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACAGTATCTACAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCTAGAAAAGGAGTGCCGTCTATTGTAATTAATCCTTCAGAGGAAGAACATGATGCAGGAGAACAAATTCTAGTGCCATCAGTAAATGCAGAAATTGATATGGCTGTATTAGCTGCTTTGCCACAGTCTATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAAACAGAAGGGTTAGTGAAGGATGTTGACAACCACGAACAACATGATATCAATTATAGGGGCAAGGGTAAAGGGATTCTGCTCAGTGAAGCTGGCATGGTTGGTTGTTGCTCCAAACATGACAATGTTGCATCAAGGAGTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGACGAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTAATGAGGAAGAAGAGGAAGTTGACTATGATGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCCCTTGTTCTAGCCTCATTGCCTCCATCAATGCAGCTGGATCTTCTTGTTCAGATGAGAGAGCGTTTGATAGCAGAGAACAGACAAAAGTATCAGAAAGTAAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCGCGAATTGCATCTGAAGCCAACAGAGAATATATATTCTCGTCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCAGCTTAGAGAAAAATAGAAGTATACAACAGAAGGCACAGGGAGCACATCATTCCCAGAATCTTGCAAATAGCATTGTAGCTGGAAATGATTTTCATAAATCAAGTGAATTGGTTAGCAATGAACCTGGAGAGCCTGCTGATGAAAATATTCAGACATATCTTGATGAGAGGGGTCGATTCCGTGTGAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGTTTGAACAGGAAAGAGCACATGTGAACAAGGCTTCAAATTTTGGAACAGTGAAAAATGTAGAAAATAAGGGTCCATCAGAAAGTTCCGTGATCCAGCTTCTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAACTATGCTTGACCAGAATGCTTCTATTGAGATATCTTTTGAATATGGTTGCAAAAATATGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGTAATCCAGTGGCGATCTTTGGTGGTAATGATACTGCAGCAGCAGTGCAACCTTCTAATTCTAAATTGGAAGAAGGAATGGTTGAAGGTAAGAGTACTGTTTTTCCTGAACATGATAAGGTGGAATTGAAGTCTTCTGTTGCAGACGAGGATAATAATAATGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGAAGGTGCTAACAACAGCTTACTGTCAGGAAAATTTGCATCTCGAGGGTGGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGATGAAATTGCGGGGGATGGAAAAGACGAATGTTTGTCATTGGTAGATGGGAATTCAAATACCTATGAGAACAAATTGGATCATGATTCAAAACATGGTGATTGTTGTTCTGATCCAATGGCTTTAAATGATAACACTGGGTTCCTGAATGATAAAAATAATAGGGAGGGATTCACTTTGTGTAGGGAAGACGGTACTGAAAAAAACGAATTACCTGAAATTGAAGATGGAGATAAAAACCATGATTTTGTTTCTGGAAATAATGCACAAACTTTCCATTTTCATGGAAGTCCGTCAAAGCCATCTGTGACATTTAGTTCAAATAAAACTGAGATATTGATTGACACAACTTGCAAAAGGGATAGTCACTCTTGTTCTGAAGATTCGATTTCAGATACAAATATAATGACGAAGGACCAGGTCCCTGTGGTTGAAGAGAAGTTATTGGATAAACATGATAATGGTAAAGGGTCTCCCTATTATAACAATACATCCAAGGCTGATCCAGTTGGTGCAACTGAAGAGGAGAAAAAGAACTATATTAATGAATCTGAACCATTTCGTAATTCTACTGACACTACTAAACCCACTATTCTTTTGGTGGAGTCATCCTTGGAAGGAGCAACAGAAGACCTTCTTATTGAGCCAAAATTGGCTTCAGAAGACAATAATGGAAATTTCTTTGATGAAAGGAACAGTAGGGGTGGCAGTGATGCGGTTAACACCCCAGGGGATTTTCCTGCTCTTGCTACTGAGGTTAGCTTGGAGGAAGAAATTCACATTCTTGGTCAAGAATATATTAACCTAGAGAACGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTTACTGAATGTCAGGAACTACTGCAAATGTTTGGTTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACAGATGACTCTGATGTCCTTTTATTTGGGGCACGTAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTAGAGACGTACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATAGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCTGGAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGAAAAAAGTGGATCAAATACCAGAAAGAAAGTGTCAAAAGTTGAAGGAAGGAGAAATTCCTTAAATTGTGATGTTAAAGAGTCTACATCAGAGCAGAACATCCCCCGTGCTCTGGAGCAAAATGAGTTGCCAGATTACATCCAAGAAACGAAGCAAACTTTCTTTAATAAGCATAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACTGTTATATCTGCGTACTGTTCTCCACATGTTGATAAATCAACTGAGCCTTTCTCATGGGGGAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGATGAATTGCTATTACCTGTGTTAAAGGAGTACAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAACGAGAGATTTGCAAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTATGCAGCCTTCTGATTTAATAGATGATTCGGCTGAAGAGTTGAACAAGAGTAGGCAGATTGGGAGAGAACCCGAGGAAAGCACATTAGAGATTTCAAGGGGAACAGACGAAAGTCTTAAAAGTAGAAGGAAATCAACAATAAAACAGTCAAAGAAAAGGAAGAATGATACTATTGCCAAGGAACTGTCAAAGAAAAAGAAAGTCCATGATGATCCCTCTTCAGCACCTGCTACATCAGAGATGGAGAATTTACAGCCAAGTAGTCATACAGAAGAACAGTGCGATGGTAAGGCATTAATTCGGAGTACACGTGGCCGAAGAAGGCATAGAGGTATGGGAATTAAAAGAGGAAGGGACAAGGAGAATCTCAGTTTTCAATCCTCATCTGCTAGCAGTGACATTGATGATCATGGGCCAAGAGTGCACGTGGATAAGGTTCCAAAAGTAGTGCGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGACCCTGAAGATGAAGATGCCGATGATTCATTTGATCAGAGTAATCAGACTGGTCCAATAGAAGAAAATTTATCTCATATTCATGGTGCATCTGAAGATGGTGCAACAGATTTGAGTGCAATAAATTTTTCTTTAAAGGAGAACTTGCCAACGGACTCTCTCAAGTCAGAAGGTCCGTTTCCCATGCATGCAGGTGAAACTAGTCATCCTAGTACTGGCAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGAGACAGACAAGCTGGATACAATTGATGATGTCAATACTGCCACAGTGGATTCTACTCCAGACTTTTCACACTGTTCTGATTGTTTGGATGAAACTGGCCGTGATAAAAATAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGACCATGTAAATACTAGTAGTTATGATCATTCGGACATAGGGGTCTTGAAAACAGAGAATGCTCATAACAGTGGAGTCTTCAATGGGGTTTTCAGTGCTATGCCGTTTTTGAGGAAAAGAAGGAAAAACTGA 5043 0.4107 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMIRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKVRKTAEKLLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNKFNHKDFIGHSRGSHVKELDEMSADKSATKEDINSSQATVSTSYNQEELDEMLAASIAAEENGKHARKGVPSIVINPSEEEHDAGEQILVPSVNAEIDMAVLAALPQSMQLDILAQLKGKKTEGLVKDVDNHEQHDINYRGKGKGILLSEAGMVGCCSKHDNVASRSDNQDSIDEMLAASIALEENDELVNNASTSVGASTNEEEEEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTSLEKNRSIQQKAQGAHHSQNLANSIVAGNDFHKSSELVSNEPGEPADENIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEFEQERAHVNKASNFGTVKNVENKGPSESSVIQLLGKSQEVNVDLVGENVQNEQTMLDQNASIEISFEYGCKNMFANGEDDIFSSLVGGNPVAIFGGNDTAAAVQPSNSKLEEGMVEGKSTVFPEHDKVELKSSVADEDNNNESEVEWEEGDCEGANNSLLSGKFASRGWLEEESNLQEAIRRSLDEIAGDGKDECLSLVDGNSNTYENKLDHDSKHGDCCSDPMALNDNTGFLNDKNNREGFTLCREDGTEKNELPEIEDGDKNHDFVSGNNAQTFHFHGSPSKPSVTFSSNKTEILIDTTCKRDSHSCSEDSISDTNIMTKDQVPVVEEKLLDKHDNGKGSPYYNNTSKADPVGATEEEKKNYINESEPFRNSTDTTKPTILLVESSLEGATEDLLIEPKLASEDNNGNFFDERNSRGGSDAVNTPGDFPALATEVSLEEEIHILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLEFRKWVESPDPTILGRLDEKSGSNTRKKVSKVEGRRNSLNCDVKESTSEQNIPRALEQNELPDYIQETKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFSWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGMQPSDLIDDSAEELNKSRQIGREPEESTLEISRGTDESLKSRRKSTIKQSKKRKNDTIAKELSKKKKVHDDPSSAPATSEMENLQPSSHTEEQCDGKALIRSTRGRRRHRGMGIKRGRDKENLSFQSSSASSDIDDHGPRVHVDKVPKVVRKSLRSRKPVNYSFEDPEDEDADDSFDQSNQTGPIEENLSHIHGASEDGATDLSAINFSLKENLPTDSLKSEGPFPMHAGETSHPSTGNHDSSDDYLKMGGGFCLDDGETDKLDTIDDVNTATVDSTPDFSHCSDCLDETGRDKNSSDILFSGTEKPENDHVNTSSYDHSDIGVLKTENAHNSGVFNGVFSAMPFLRKRRKN* 1681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00700 1680 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 259 - -
Lapu1g00700 1680 SMART xpgineu 1035 1104 IPR006086 GO:0004518
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1625 1644 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 129 143 - -
Lapu1g00700 1680 CDD PIN_XPG_RAD2 1021 1105 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1487 1514 - -
Lapu1g00700 1680 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lapu1g00700 1680 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Lapu1g00700 1680 Gene3D - 1 148 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1337 1372 - -
Lapu1g00700 1680 SMART HhH_4 1106 1139 IPR008918 GO:0003677|GO:0003824
Lapu1g00700 1680 Coils Coil 991 1025 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 964 978 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 466 488 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1379 1401 - -
Lapu1g00700 1680 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Lapu1g00700 1680 FunFam DNA repair protein UVH3 985 1103 - -
Lapu1g00700 1680 Pfam XPG I-region 1038 1119 IPR006086 GO:0004518
Lapu1g00700 1680 Gene3D - 989 1103 - -
Lapu1g00700 1680 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lapu1g00700 1680 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lapu1g00700 1680 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lapu1g00700 1680 Gene3D - 1104 1179 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1404 1420 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 891 912 - -
Lapu1g00700 1680 CDD PIN_XPG_RAD2 2 92 - -
Lapu1g00700 1680 SMART xpgn3 1 98 IPR006085 GO:0004518
Lapu1g00700 1680 CDD H3TH_XPG 1107 1251 - -
Lapu1g00700 1680 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1104 1313 IPR036279 -
Lapu1g00700 1680 ProSitePatterns XPG protein signature 2. 1038 1052 IPR019974 GO:0016788
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 129 150 - -
Lapu1g00700 1680 FunFam DNA repair protein UVH3 1 146 - -
Lapu1g00700 1680 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1323 1475 - -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 962 982 - -
Lapu1g00700 1680 FunFam DNA repair protein UVH3 1104 1161 - -
Lapu1g00700 1680 SUPERFAMILY PIN domain-like 2 1119 IPR029060 -
Lapu1g00700 1680 Pfam Ubiquitin binding region 365 390 IPR025527 -
Lapu1g00700 1680 Pfam Ubiquitin binding region 232 257 IPR025527 -
Lapu1g00700 1680 MobiDBLite consensus disorder prediction 1542 1572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00700 Lapu-Chr1 20043825 20055510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00700 1029 1147 Core DNA Replication Machinery Family AT5G26680 35.246 5.38e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00700 K10846 - gmx:100820295 2577.36