Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00691 ATGGAGTCACCACCCAGTAATCACCACGCCGTCGACGGCGATGCCAACGACGTTGGACCCTTCTCCCACCGTGACGACGAAGACGACAAGCCCCAACCTCTCACCGGCGACGGCGCCAGTCCCGGAAAGATTTTTATTGGCGGTTTAGCGAGAGAAACCACTATTGCACAATTCGTCAAGCACTTTGGTATATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGCTTCGGTTTCATAACTTATGCGGATCCCTCTGTGGTTGATAGAGTTATTGAGGACTCTCACATTATCAACGGCAAGCAGGTGGAGATTAAGCGGACCATACCGAGGGGTGCCGTTGGCTCGAACTCGAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGAGTGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGATCACTCTACTAATCGTTCACGTGGCTTTGGGTTTATTACCTATGACTCTGAAGAGGCTGTTGATGAACTCTTAGCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAATCCACCAGCCCCGTCATCCAAGCGCTATAATGATGCCCGATCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGAGGTGCCTATGGTGGTAGGGGTAGTGCTTATGGTGGCTTTGGAAATGAATTTGGTGGGTATGGAAGATATGCCGGTGCCATGGGGCCATATAGAGGTGATCCTTCTCTTGGGTATGCTGGCCGATATGGTGGAGGCTATGGCAGAGGCTATGATCTTGGTGGGTACGGCGGAGCTAATGAGGGTTATGGGACATATGGTGGTGGTGGGGGTTCTTCTGGTAATGCTTATGGAAGCAGCTATGATGCCAGCCTAGGGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGCTCGATATCATCCGTATGGAAGATAG 1110 0.5 MESPPSNHHAVDGDANDVGPFSHRDDEDDKPQPLTGDGASPGKIFIGGLARETTIAQFVKHFGIYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDRVIEDSHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDELLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDARSSYGGGYGDAYDGFGGNFGMGGYRSGGAYGGRGSAYGGFGNEFGGYGRYAGAMGPYRGDPSLGYAGRYGGGYGRGYDLGGYGGANEGYGTYGGGGGSSGNAYGSSYDASLGGGYGGASGGSFYGTRGGYGGAGTARYHPYGR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00691 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 27 369 - -
Lapu1g00691 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Lapu1g00691 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Lapu1g00691 369 SUPERFAMILY RNA-binding domain, RBD 127 240 IPR035979 GO:0003676
Lapu1g00691 369 MobiDBLite consensus disorder prediction 1 41 - -
Lapu1g00691 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 124 245 - -
Lapu1g00691 369 Gene3D - 42 121 IPR012677 -
Lapu1g00691 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Lapu1g00691 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Lapu1g00691 369 Gene3D - 123 240 IPR012677 -
Lapu1g00691 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Lapu1g00691 369 SUPERFAMILY RNA-binding domain, RBD 7 121 IPR035979 GO:0003676
Lapu1g00691 369 MobiDBLite consensus disorder prediction 207 226 - -
Lapu1g00691 369 SMART rrm1_1 133 206 IPR000504 GO:0003723
Lapu1g00691 369 SMART rrm1_1 43 114 IPR000504 GO:0003723
Lapu1g00691 369 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00691 Lapu-Chr1 19906817 19911405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00691 21 241 Eukaryotic Initiation Factors Gene Family AT4G34110 25.110 2.09e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00691 K12741 - gmx:100813165 488.419